ECOD: domain e3tndB1

Domain ID e3tndB1

A: beta barrels
X: cradle loop barrel
H: RIFT-related
T: AbrB
F: MazE_antitoxin

UID:	000183540
Type:	Automatic domain
Parent:	e1mvfD1
Range:	B:1G-68
Ligands:	NA SO4
PDB:	3tnd
PDB Description:	Antitoxin VapB
In assembly with:	e3tndD1
UniProt:	O06663
Species:	Shigella flexneri

Domain
In chain context
In PDB context

Structure of domain e3tndB1 in assembly with e3tndD1

Domains in the same chain:

Download Pymol

e3tndB1	B:1G-68	cradle loop barrel	RIFT-related	AbrB

Domains in the same PDB:

e3tndA1	A:1-132	HAD domain-like	HAD domain-related	PIN domain-like
e3tndB1	B:1G-68	cradle loop barrel	RIFT-related	AbrB
e3tndC1	C:1-132	HAD domain-like	HAD domain-related	PIN domain-like
e3tndD1	D:1G-68	cradle loop barrel	RIFT-related	AbrB
e3tndE1	E:1-132	HAD domain-like	HAD domain-related	PIN domain-like
e3tndF1	F:2-67	cradle loop barrel	RIFT-related	AbrB
e3tndG1	G:1-132	HAD domain-like	HAD domain-related	PIN domain-like
e3tndH1	H:2-68	cradle loop barrel	RIFT-related	AbrB

Structural contacts of domain e3tndB1 of H-group "RIFT-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3tndD1	B:X,Y,Z->D:x,y,z	RIFT-related	Interaction Interface Pymol
e3tndA1	B:x,y,z->A:X,Y,Z	HAD domain-related	Interaction Interface Pymol
e3tndF1	B:X-Y,-Y,-Z+1->F:x,y,z	RIFT-related	Interaction Interface Pymol
e3tndD1	B:x,y,z->D:X-Y,-Y+1,-Z+1	RIFT-related	Interaction Interface Pymol
e3tndG1	B:x,y,z->G:X,Y,Z	HAD domain-related	Interaction Interface Pymol
e3tndC1	B:x,y,z->C:X,Y,Z	HAD domain-related	Interaction Interface Pymol
e3tndH1	B:X,Y,Z->H:x,y,z	RIFT-related	Interaction Interface Pymol
e3tndC1	B:x,y,z->C:X-Y,-Y+1,-Z+1	HAD domain-related	Interaction Interface Pymol