Domain ID e3tvgN1

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: Ribosomal_S11
UID: 000963357
Type: Automatic domain
Parent: e2uubK1
Range: N:1-119
Ligands: MG
PDB: 3tvg
PDB Description:
Hsap BLAST neighbor: P82912
Species:

Structure of domain e3tvgN1

Domains in the same chain:

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e3tvgN1 N:1-119 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like

Domains in the same PDB:

e3tvgF2 F:1-105 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e3tvgF1 F:106-206 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e3tvgH4 H:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e3tvgH3 H:73-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3tvgI1 I:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e3tvgJ1 J:1-155 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e3tvgK1 K:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e3tvgK2 K:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e3tvgM1 M:1-98 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e3tvgN1 N:1-119 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3tvgO1 O:1-122 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3tvgQ1 Q:1-60 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3tvgR2 R:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e3tvgS1 S:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e3tvgU2 U:17-88 HTH HTH tri-helical
e3tvgW1 W:1-99 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e3tvgN1 of H-group "Ribonuclease H-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3tvgU2 N:X,Y,Z->U:x,y,z HTH Interaction Interface Pymol
e3tvgJ1 N:x,y,z->J:X,Y,Z Ribosomal protein S7 Interaction Interface Pymol