Domain ID e3u5gf1

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  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: Ribosomal_S27
UID: 001003784
Type: Automatic domain
Parent: e3j43Y1
Range: f:100-152
Ligands: ZN
PDB: 3u5g
PDB Description:
Hsap BLAST neighbor: P62979
Species:

Structure of domain e3u5gf1

Domains in the same chain:

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e3u5gf1 f:100-152 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Domains in the same PDB:

e3u5ga1 a:2-98 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3u5gb1 b:2-82 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3u5gB2 B:20-113 Ribosomal protein L25-like 40S ribosomal protein S3A N-terminal domain 40S ribosomal protein S3A N-terminal domain
e3u5gB1 B:114-235 T-fold 40S ribosomal protein S3A C-terminal domain 40S ribosomal protein S3A C-terminal domain
e3u5gc1 c:5-67 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3u5gd1 d:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3u5gD2 D:3-91 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e3u5gD1 D:92-225 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e3u5gE3 E:2-116 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e3u5gE2 E:117-175 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3u5gE1 E:176-261 SH3 SH3 SH3
e3u5gf1 f:100-152 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3u5gF1 F:20-225 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e3u5gg1 g:2-319 beta-propeller-like beta-propeller 7-bladed
e3u5gG1 G:1-218 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e3u5gH2 H:2-105 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e3u5gH1 H:106-187 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e3u5gI1 I:2-200 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3u5gK1 K:1-98 HTH HTH winged
e3u5gM1 M:20-143 Bacillus chorismate mutase-like L30e-like L30e-like
e3u5gN1 N:2-82 HTH 40S ribosomal protein S13 N-terminal domain 40S ribosomal protein S13 N-terminal domain
e3u5gN2 N:83-151 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e3u5gO1 O:10-137 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3u5gT1 T:2-144 HTH HTH winged
e3u5gU1 U:12-121 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e3u5gW1 W:2-67 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e3u5gW2 W:68-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e3u5gX1 X:2-145 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3u5gY2 Y:2-135 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3u5gZ1 Z:37-105 HTH HTH winged

Structural contacts of domain e3u5gf1 of H-group "Rubredoxin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3u5gM1 f:x,y,z->M:X,Y,Z L30e-like Interaction Interface Pymol
e3u5gd1 f:x,y,z->d:X,Y,Z LIM domain-like Interaction Interface Pymol