Domain ID e3u5zR1

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  • A: a+b two layers
  • X: DNA clamp
  • H: DNA clamp
  • T: DNA clamp
  • F: DNA_PPF
UID: 001019817
Type: Automatic domain
Parent: e1b77A1
Range: R:6001-6110
PDB: 3u5z
PDB Description: DNA POLYMERASE PROCESSIVITY COMPONENT
UniProt: P04525
Species:

Structure of domain e3u5zR1

Domains in the same chain:

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e3u5zR1 R:6001-6110 DNA clamp DNA clamp DNA clamp
e3u5zR2 R:6111-6228 DNA clamp DNA clamp DNA clamp

Domains in the same PDB:

e3u5zA1 A:2-112 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3u5zA2 A:113-187 HTH HTH HTH domain in DNA polymerase accessory protein 62
e3u5zB1 B:0-159 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3u5zB3 B:160-257 Histone-like Histone-related AAA+ ATPase lid domain
e3u5zB4 B:258-319 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3u5zC1 C:0-159 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3u5zC3 C:160-257 Histone-like Histone-related AAA+ ATPase lid domain
e3u5zC4 C:258-319 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3u5zD3 D:0-159 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3u5zD2 D:160-257 Histone-like Histone-related AAA+ ATPase lid domain
e3u5zD4 D:258-319 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3u5zE1 E:2-159 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3u5zE3 E:160-257 Histone-like Histone-related AAA+ ATPase lid domain
e3u5zE2 E:258-319 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3u5zF1 F:7001-7110 DNA clamp DNA clamp DNA clamp
e3u5zF2 F:7111-7228 DNA clamp DNA clamp DNA clamp
e3u5zG1 G:5001-5110 DNA clamp DNA clamp DNA clamp
e3u5zG2 G:5111-5228 DNA clamp DNA clamp DNA clamp
e3u5zH1 H:6001-6110 DNA clamp DNA clamp DNA clamp
e3u5zH2 H:6111-6228 DNA clamp DNA clamp DNA clamp
e3u5zK2 K:2-112 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3u5zK1 K:113-187 HTH HTH HTH domain in DNA polymerase accessory protein 62
e3u5zL2 L:0-159 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3u5zL4 L:160-257 Histone-like Histone-related AAA+ ATPase lid domain
e3u5zL1 L:258-319 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3u5zM1 M:0-159 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3u5zM2 M:160-257 Histone-like Histone-related AAA+ ATPase lid domain
e3u5zM3 M:258-319 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3u5zN3 N:0-159 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3u5zN1 N:160-257 Histone-like Histone-related AAA+ ATPase lid domain
e3u5zN4 N:258-319 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3u5zO3 O:2-159 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3u5zO4 O:160-257 Histone-like Histone-related AAA+ ATPase lid domain
e3u5zO1 O:258-319 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3u5zP1 P:7001-7110 DNA clamp DNA clamp DNA clamp
e3u5zP2 P:7111-7228 DNA clamp DNA clamp DNA clamp
e3u5zQ1 Q:5001-5110 DNA clamp DNA clamp DNA clamp
e3u5zQ2 Q:5111-5228 DNA clamp DNA clamp DNA clamp
e3u5zR1 R:6001-6110 DNA clamp DNA clamp DNA clamp
e3u5zR2 R:6111-6228 DNA clamp DNA clamp DNA clamp

Structural contacts of domain e3u5zR1 of H-group "DNA clamp":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3u5zO3 R:x,y,z->O:X,Y,Z P-loop domains-related Interaction Interface Pymol
e3u5zE2 R:x,y,z->E:-X-1/2,-Y,Z-1/2 DNA polymerase III clamp loader subunits, C-terminal domain Interaction Interface Pymol
e3u5zK1 R:x,y,z->K:X,Y,Z HTH Interaction Interface Pymol
e3u5zP2 R:x,y,z->P:X,Y,Z DNA clamp Interaction Interface Pymol