Domain ID e3u60D2

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  • A: a/b three-layered sandwiches
  • X: P-loop domains-like
  • H: P-loop domains-related
  • T: P-loop containing nucleoside triphosphate hydrolases
  • F: AAA
UID: 001577939
Type: Automatic domain
Parent: e1lv7A2
Range: D:1-159
Ligands: 08T MG
PDB: 3u60
PDB Description: DNA POLYMERASE ACCESSORY PROTEIN 44
UniProt: P04526
Hsap BLAST neighbor: P40937
Species:

Structure of domain e3u60D2

Domains in the same chain:

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e3u60D2 D:1-159 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3u60D3 D:160-257 Histone-like Histone-related AAA+ ATPase lid domain
e3u60D4 D:258-319 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain

Domains in the same PDB:

e3u60A2 A:2-112 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3u60A1 A:113-187 HTH HTH HTH domain in DNA polymerase accessory protein 62
e3u60B2 B:1-160 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3u60B1 B:161-230 Histone-like Histone-related AAA+ ATPase lid domain
e3u60B3 B:231-319 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3u60C3 C:0-160 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3u60C2 C:161-230 Histone-like Histone-related AAA+ ATPase lid domain
e3u60C1 C:231-319 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3u60D2 D:1-159 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3u60D3 D:160-257 Histone-like Histone-related AAA+ ATPase lid domain
e3u60D4 D:258-319 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3u60E1 E:2-159 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3u60E4 E:160-257 Histone-like Histone-related AAA+ ATPase lid domain
e3u60E2 E:258-319 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3u60F1 F:7001-7110 DNA clamp DNA clamp DNA clamp
e3u60F2 F:7111-7228 DNA clamp DNA clamp DNA clamp
e3u60G1 G:5001-5110 DNA clamp DNA clamp DNA clamp
e3u60G2 G:5111-5228 DNA clamp DNA clamp DNA clamp
e3u60H1 H:6001-6110 DNA clamp DNA clamp DNA clamp
e3u60H2 H:6111-6228 DNA clamp DNA clamp DNA clamp

Structural contacts of domain e3u60D2 of H-group "P-loop domains-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3u60E1 D:X,Y,Z->E:x,y,z P-loop domains-related Interaction Interface Pymol
e3u60C1 D:x,y,z->C:X,Y,Z DNA polymerase III clamp loader subunits, C-terminal domain Interaction Interface Pymol
e3u60C3 D:x,y,z->C:X,Y,Z P-loop domains-related Interaction Interface Pymol
e3u60C2 D:x,y,z->C:X,Y,Z Histone-related Interaction Interface Pymol
e3u60G1 D:X,Y,Z->G:x,y,z DNA clamp Interaction Interface Pymol
e3u60H2 D:X,Y,Z->H:x,y,z DNA clamp Interaction Interface Pymol
e3u60B3 D:x,y,z->B:X,Y,Z DNA polymerase III clamp loader subunits, C-terminal domain Interaction Interface Pymol