ECOD: domain e3u60E1

Domain ID e3u60E1

A: a/b three-layered sandwiches
X: P-loop domains-like
H: P-loop domains-related
T: P-loop containing nucleoside triphosphate hydrolases
F: AAA

UID:	001577941
Type:	Automatic domain
Parent:	e1lv7A2
Range:	E:2-159
Ligands:	08T ADP MG
PDB:	3u60
PDB Description:	DNA POLYMERASE ACCESSORY PROTEIN 44
UniProt:	P04526
Hsap BLAST neighbor:	P40937
Species:

Domains in the same chain:

Download Pymol

e3u60E1	E:2-159	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3u60E4	E:160-257	Histone-like	Histone-related	AAA+ ATPase lid domain
e3u60E2	E:258-319	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain

Domains in the same PDB:

e3u60A2	A:2-112	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain
e3u60A1	A:113-187	HTH	HTH	HTH domain in DNA polymerase accessory protein 62
e3u60B2	B:1-160	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3u60B1	B:161-230	Histone-like	Histone-related	AAA+ ATPase lid domain
e3u60B3	B:231-319	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain
e3u60C3	C:0-160	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3u60C2	C:161-230	Histone-like	Histone-related	AAA+ ATPase lid domain
e3u60C1	C:231-319	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain
e3u60D2	D:1-159	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3u60D3	D:160-257	Histone-like	Histone-related	AAA+ ATPase lid domain
e3u60D4	D:258-319	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain
e3u60E1	E:2-159	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3u60E4	E:160-257	Histone-like	Histone-related	AAA+ ATPase lid domain
e3u60E2	E:258-319	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain
e3u60F1	F:7001-7110	DNA clamp	DNA clamp	DNA clamp
e3u60F2	F:7111-7228	DNA clamp	DNA clamp	DNA clamp
e3u60G1	G:5001-5110	DNA clamp	DNA clamp	DNA clamp
e3u60G2	G:5111-5228	DNA clamp	DNA clamp	DNA clamp
e3u60H1	H:6001-6110	DNA clamp	DNA clamp	DNA clamp
e3u60H2	H:6111-6228	DNA clamp	DNA clamp	DNA clamp

Structural contacts of domain e3u60E1 of H-group "P-loop domains-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3u60D2	E:x,y,z->D:X,Y,Z	P-loop domains-related	Interaction Interface Pymol
e3u60D3	E:x,y,z->D:X,Y,Z	Histone-related	Interaction Interface Pymol
e3u60D4	E:x,y,z->D:X,Y,Z	DNA polymerase III clamp loader subunits, C-terminal domain	Interaction Interface Pymol
e3u60A1	E:X,Y,Z->A:x,y,z	HTH	Interaction Interface Pymol
e3u60H2	E:X,Y,Z->H:x,y,z	DNA clamp	Interaction Interface Pymol
e3u60H1	E:X,Y,Z->H:x,y,z	DNA clamp	Interaction Interface Pymol