Domain ID e3v2551

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  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: Ribosomal_L32p
UID: 000966834
Type: Automatic domain
Parent: e2j0151
Range: 5:1-59
Ligands: ZN
PDB: 3v25
PDB Description:
Species:

Structure of domain e3v2551

Domains in the same chain:

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e3v2551 5:1-59 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Domains in the same PDB:

e3v2501 0:1-76 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3v2511 1:1-97 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e3v2521 2:1-70 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3v2531 3:1-59 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e3v2541 4:1-46 Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p
e3v2551 5:1-59 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3v2571 7:1-49 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e3v2581 8:1-64 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e3v2591 9:1-36 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e3v25D5 D:2-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3v25D6 D:127-276 SH3 SH3 SH3
e3v25F2 F:6-208 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3v25G1 G:1-181 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3v25H3 H:2-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3v25H4 H:83-175 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3v25I2 I:1-53 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e3v25I1 I:54-145 Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain
e3v25N1 N:1-140 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3v25O1 O:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3v25R1 R:1-118 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e3v25U1 U:1-116 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e3v25V1 V:1-101 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e3v25W1 W:1-113 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3v25X1 X:1-95 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3v25Y1 Y:1-107 SH3 SH3 SH3
e3v25Z1 Z:1-92 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e3v25Z2 Z:93-198 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related

Structural contacts of domain e3v2551 of H-group "Rubredoxin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3v25W1 5:x,y,z->W:X,Y,Z Ribosomal protein L22 Interaction Interface Pymol
e3v25R1 5:x,y,z->R:X,Y,Z Prokaryotic ribosomal protein L17 Interaction Interface Pymol