| UID: | 000147414 |
|---|---|
| Type: | Automatic domain |
| Parent: | e7odcA1 |
| Range: | A:-3-33,A:286-422 |
| Ligands: | EDO |
| PDB: | 3vab |
| PDB Description: | DIAMINOPIMELATE DECARBOXYLASE 1 |
| UniProt: | Q8YJJ9 |
| Species: |
Structure of domain e3vabA1
Domains in the same chain:
| e3vabA1 | A:-3-33,A:286-422 | cradle loop barrel | RIFT-related | Alanine racemase-C |
| e3vabA2 | A:34-285 | TIM beta/alpha-barrel | TIM barrels | TIM barrels |
Domains in the same PDB:
| e3vabA1 | A:-3-33,A:286-422 | cradle loop barrel | RIFT-related | Alanine racemase-C |
| e3vabA2 | A:34-285 | TIM beta/alpha-barrel | TIM barrels | TIM barrels |
| e3vabB6 | B:-3-33,B:286-422 | cradle loop barrel | RIFT-related | Alanine racemase-C |
| e3vabB5 | B:34-285 | TIM beta/alpha-barrel | TIM barrels | TIM barrels |
Structural contacts of domain e3vabA1 of H-group "RIFT-related":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e3vabB5 | A:X,Y,Z->B:x,y,z | TIM barrels | Interaction Interface Pymol |
| e3vabB6 | A:X,Y,Z->B:x,y,z | RIFT-related | Interaction Interface Pymol |
| e3vabB5 | A:x,y,z->B:X-1,Y,Z-1 | TIM barrels | Interaction Interface Pymol |
| e3vabA2 | A:x,y,z->A:-X,Y-1/2,-Z | TIM barrels | Interaction Interface Pymol |
