| UID: | 000147415 |
|---|---|
| Type: | Automatic domain |
| Parent: | e1hkvA2 |
| Range: | A:34-285 |
| Ligands: | EDO SO4 |
| PDB: | 3vab |
| PDB Description: | DIAMINOPIMELATE DECARBOXYLASE 1 |
| UniProt: | Q8YJJ9 |
| Hsap BLAST neighbor: | P11926 |
| Species: |
Structure of domain e3vabA2
Domains in the same chain:
| e3vabA1 | A:-3-33,A:286-422 | cradle loop barrel | RIFT-related | Alanine racemase-C |
| e3vabA2 | A:34-285 | TIM beta/alpha-barrel | TIM barrels | TIM barrels |
Domains in the same PDB:
| e3vabA1 | A:-3-33,A:286-422 | cradle loop barrel | RIFT-related | Alanine racemase-C |
| e3vabA2 | A:34-285 | TIM beta/alpha-barrel | TIM barrels | TIM barrels |
| e3vabB6 | B:-3-33,B:286-422 | cradle loop barrel | RIFT-related | Alanine racemase-C |
| e3vabB5 | B:34-285 | TIM beta/alpha-barrel | TIM barrels | TIM barrels |
Structural contacts of domain e3vabA2 of H-group "TIM barrels":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e3vabB6 | A:X,Y,Z->B:x,y,z | RIFT-related | Interaction Interface Pymol |
| e3vabB5 | A:-X,Y-1/2,-Z+1->B:x,y,z | TIM barrels | Interaction Interface Pymol |
| e3vabB5 | A:x,y,z->B:X-1,Y,Z-1 | TIM barrels | Interaction Interface Pymol |
| e3vabB6 | A:x,y,z->B:X-1,Y,Z-1 | RIFT-related | Interaction Interface Pymol |
| e3vabA1 | A:-X,Y-1/2,-Z->A:x,y,z | RIFT-related | Interaction Interface Pymol |
