Domain ID e3vqiB12

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  • A: a+b two layers
  • X: beta-Grasp
  • H: Ubiquitin-related
  • T: Ubiquitin-like
  • F: ATG5_UblB
UID: 001210393
Type: Automatic domain
Parent: e2dymA3
Range: B:191-271
Ligands: EPE SO4
PDB: 3vqi
PDB Description: ATG5
UniProt: J3QW33
Species: Kluyveromyces marxianus

Structure of domain e3vqiB12

Domains in the same chain:

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e3vqiB11 B:1-131 beta-Grasp Ubiquitin-related Ubiquitin-like
e3vqiB10 B:132-190 Helical domain in autophagy protein 5 Helical domain in autophagy protein 5 Helical domain in autophagy protein 5
e3vqiB12 B:191-271 beta-Grasp Ubiquitin-related Ubiquitin-like

Domains in the same PDB:

e3vqiA2 A:1-132 beta-Grasp Ubiquitin-related Ubiquitin-like
e3vqiA6 A:133-194 Helical domain in autophagy protein 5 Helical domain in autophagy protein 5 Helical domain in autophagy protein 5
e3vqiA7 A:195-271 beta-Grasp Ubiquitin-related Ubiquitin-like
e3vqiB11 B:1-131 beta-Grasp Ubiquitin-related Ubiquitin-like
e3vqiB10 B:132-190 Helical domain in autophagy protein 5 Helical domain in autophagy protein 5 Helical domain in autophagy protein 5
e3vqiB12 B:191-271 beta-Grasp Ubiquitin-related Ubiquitin-like
e3vqiC11 C:1-132 beta-Grasp Ubiquitin-related Ubiquitin-like
e3vqiC10 C:133-190 Helical domain in autophagy protein 5 Helical domain in autophagy protein 5 Helical domain in autophagy protein 5
e3vqiC12 C:191-270 beta-Grasp Ubiquitin-related Ubiquitin-like
e3vqiD11 D:1-132 beta-Grasp Ubiquitin-related Ubiquitin-like
e3vqiD10 D:133-190 Helical domain in autophagy protein 5 Helical domain in autophagy protein 5 Helical domain in autophagy protein 5
e3vqiD12 D:191-271 beta-Grasp Ubiquitin-related Ubiquitin-like
e3vqiE11 E:1-132 beta-Grasp Ubiquitin-related Ubiquitin-like
e3vqiE10 E:133-190 Helical domain in autophagy protein 5 Helical domain in autophagy protein 5 Helical domain in autophagy protein 5
e3vqiE12 E:191-271 beta-Grasp Ubiquitin-related Ubiquitin-like

Structural contacts of domain e3vqiB12 of H-group "Ubiquitin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3vqiE11 B:X,Y,Z->E:x,y,z Ubiquitin-related Interaction Interface Pymol
e3vqiE10 B:X,Y,Z->E:x,y,z Helical domain in autophagy protein 5 Interaction Interface Pymol