Domain ID e3vqsA1

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  • A: alpha bundles
  • X: helical bundle domain in reverse transcriptase-like polymerases
  • H: helical bundle domain in reverse transcriptase-like polymerases
  • T: helical bundle domain in reverse transcriptase-like polymerases
  • F: RdRP_3
UID: 000151693
Type: Automatic domain
Parent: e1gx5A1
Range: A:353-553
Ligands: JT1
PDB: 3vqs
PDB Description: RNA-DIRECTED RNA POLYMERASE
UniProt: P26663
Species: Hepatitis C virus

Structure of domain e3vqsA1

Domains in the same chain:

e3vqsA2 A:1-352 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3vqsA1 A:353-553 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases

Domains in the same PDB:

e3vqsA2 A:1-352 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3vqsA1 A:353-553 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e3vqsB3 B:1-353 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3vqsB4 B:354-557 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e3vqsC3 C:1-353 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3vqsC4 C:354-556 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e3vqsD3 D:1-358 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3vqsD4 D:359-553 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases

Structural contacts of domain e3vqsA1 of H-group "helical bundle domain in reverse transcriptase-like polymerases":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3vqsC4 A:X,Y,Z->C:x,y,z helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e3vqsD3 A:X,Y,Z->D:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3vqsD3 A:X-1/2,-Y+1/2,-Z->D:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol