ECOD: domain e3vqtB3

Domain ID e3vqtB3

A: a/b three-layered sandwiches
X: P-loop domains-like
H: P-loop domains-related
T: P-loop containing nucleoside triphosphate hydrolases
F: GTP_EFTU

UID:	001231285
Type:	Automatic domain
Parent:	e2c78A3
Range:	B:2-47,B:70-278
Ligands:	GDP
PDB:	3vqt
PDB Description:	Peptide chain release factor 3
UniProt:	B8DIL5
Hsap BLAST neighbor:	Q96RP9
Species:

Domain
In chain context
In PDB context

Structure of domain e3vqtB3

Domains in the same chain:

Download Pymol

e3vqtB3	B:2-47,B:70-278	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3vqtB5	B:279-389	cradle loop barrel	RIFT-related	Alanine racemase-C
e3vqtB4	B:390-528	Alpha-beta plaits	EF-G C-terminal domain-like	EF-G C-terminal domain-like

Domains in the same PDB:

e3vqtA7	A:1-48,A:69-278	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3vqtA9	A:279-389	cradle loop barrel	RIFT-related	Alanine racemase-C
e3vqtA8	A:390-529	Alpha-beta plaits	EF-G C-terminal domain-like	EF-G C-terminal domain-like
e3vqtB3	B:2-47,B:70-278	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3vqtB5	B:279-389	cradle loop barrel	RIFT-related	Alanine racemase-C
e3vqtB4	B:390-528	Alpha-beta plaits	EF-G C-terminal domain-like	EF-G C-terminal domain-like
e3vqtC3	C:2-47,C:69-278	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3vqtC5	C:279-389	cradle loop barrel	RIFT-related	Alanine racemase-C
e3vqtC4	C:390-529	Alpha-beta plaits	EF-G C-terminal domain-like	EF-G C-terminal domain-like
e3vqtD3	D:2-45,D:70-278	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3vqtD5	D:279-389	cradle loop barrel	RIFT-related	Alanine racemase-C
e3vqtD4	D:390-528	Alpha-beta plaits	EF-G C-terminal domain-like	EF-G C-terminal domain-like

Structural contacts of domain e3vqtB3 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3vqtA8	B:x,y,z->A:X,Y,Z	EF-G C-terminal domain-like	Interaction Interface Pymol
e3vqtA7	B:x,y,z->A:X,Y-1,Z	P-loop domains-related	Interaction Interface Pymol
e3vqtA9	B:x,y,z->A:X,Y-1,Z	RIFT-related	Interaction Interface Pymol
e3vqtD4	B:X,Y,Z-1->D:x,y,z	EF-G C-terminal domain-like	Interaction Interface Pymol
e3vqtD5	B:X,Y,Z-1->D:x,y,z	RIFT-related	Interaction Interface Pymol
e3vqtA8	B:X-1,Y,Z->A:x,y,z	EF-G C-terminal domain-like	Interaction Interface Pymol