ECOD: domain e3vqtD4

Domain ID e3vqtD4

A: a+b two layers
X: Alpha-beta plaits
H: EF-G C-terminal domain-like
T: EF-G C-terminal domain-like
F: RF3_C

UID:	001231293
Type:	Automatic domain
Parent:	e3uoqW5
Range:	D:390-528
PDB:	3vqt
PDB Description:	Peptide chain release factor 3
UniProt:	B8DIL5
Species:

Domain
In chain context
In PDB context

Structure of domain e3vqtD4

Domains in the same chain:

Download Pymol

e3vqtD3	D:2-45,D:70-278	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3vqtD5	D:279-389	cradle loop barrel	RIFT-related	Alanine racemase-C
e3vqtD4	D:390-528	Alpha-beta plaits	EF-G C-terminal domain-like	EF-G C-terminal domain-like

Domains in the same PDB:

e3vqtA7	A:1-48,A:69-278	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3vqtA9	A:279-389	cradle loop barrel	RIFT-related	Alanine racemase-C
e3vqtA8	A:390-529	Alpha-beta plaits	EF-G C-terminal domain-like	EF-G C-terminal domain-like
e3vqtB3	B:2-47,B:70-278	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3vqtB5	B:279-389	cradle loop barrel	RIFT-related	Alanine racemase-C
e3vqtB4	B:390-528	Alpha-beta plaits	EF-G C-terminal domain-like	EF-G C-terminal domain-like
e3vqtC3	C:2-47,C:69-278	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3vqtC5	C:279-389	cradle loop barrel	RIFT-related	Alanine racemase-C
e3vqtC4	C:390-529	Alpha-beta plaits	EF-G C-terminal domain-like	EF-G C-terminal domain-like
e3vqtD3	D:2-45,D:70-278	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3vqtD5	D:279-389	cradle loop barrel	RIFT-related	Alanine racemase-C
e3vqtD4	D:390-528	Alpha-beta plaits	EF-G C-terminal domain-like	EF-G C-terminal domain-like

Structural contacts of domain e3vqtD4 of H-group "EF-G C-terminal domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3vqtC3	D:x,y,z->C:X,Y,Z	P-loop domains-related	Interaction Interface Pymol
e3vqtB3	D:x,y,z->B:X,Y,Z-1	P-loop domains-related	Interaction Interface Pymol
e3vqtA9	D:X-1,Y+1,Z+1->A:x,y,z	RIFT-related	Interaction Interface Pymol
e3vqtA9	D:x,y,z->A:X,Y-1,Z-1	RIFT-related	Interaction Interface Pymol
e3vqtC3	D:X-1,Y,Z->C:x,y,z	P-loop domains-related	Interaction Interface Pymol
e3vqtD4	D:x,y,z->D:X-1,Y,Z	EF-G C-terminal domain-like	Interaction Interface Pymol
e3vqtD4	D:X-1,Y,Z->D:x,y,z	EF-G C-terminal domain-like	Interaction Interface Pymol