Domain ID e3vr4D4

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  • A: a/b three-layered sandwiches
  • X: P-loop domains-like
  • H: P-loop domains-related
  • T: P-loop containing nucleoside triphosphate hydrolases
  • F: ATP-synt_ab
UID: 001214078
Type: Automatic domain
Parent: e2jdiA3
Range: D:78-355
Ligands: GOL
PDB: 3vr4
PDB Description: V-TYPE SODIUM ATPASE SUBUNIT B
UniProt: Q08637
Hsap BLAST neighbor: P21281
Species: Enterococcus hirae

Structure of domain e3vr4D4

Domains in the same chain:

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e3vr4D6 D:4-77 cradle loop barrel RIFT-related Alanine racemase-C
e3vr4D4 D:78-355 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3vr4D5 D:356-455 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase

Domains in the same PDB:

e3vr4A1 A:-6-63 cradle loop barrel RIFT-related Alanine racemase-C
e3vr4A3 A:64-441 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3vr4A2 A:436-580 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase
e3vr4B3 B:-6-69 cradle loop barrel RIFT-related Alanine racemase-C
e3vr4B4 B:70-441 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3vr4B2 B:442-586 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase
e3vr4C1 C:-6-62 cradle loop barrel RIFT-related Alanine racemase-C
e3vr4C3 C:64-441 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3vr4C2 C:435-579 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase
e3vr4D6 D:4-77 cradle loop barrel RIFT-related Alanine racemase-C
e3vr4D4 D:78-355 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3vr4D5 D:356-455 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase
e3vr4E6 E:4-77 cradle loop barrel RIFT-related Alanine racemase-C
e3vr4E4 E:78-355 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3vr4E5 E:356-455 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase
e3vr4F6 F:1-77 cradle loop barrel RIFT-related Alanine racemase-C
e3vr4F4 F:78-355 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3vr4F5 F:356-455 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase
e3vr4H1 H:2-103 Flavodoxin-like AtpF-like AtpF-like

Structural contacts of domain e3vr4D4 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3vr4A1 D:x,y,z->A:X,Y,Z RIFT-related Interaction Interface Pymol
e3vr4A1 D:x,y,z->A:X,Y,Z RIFT-related Interaction Interface Pymol
e3vr4A1 D:x,y,z->C:X,Y,Z RIFT-related Interaction Interface Pymol
e3vr4C2 D:x,y,z->C:X,Y,Z C-terminal domain of alpha and beta subunits of F1 ATP synthase Interaction Interface Pymol
e3vr4F4 D:X-1/2,-Y+1/2,-Z+1->F:x,y,z P-loop domains-related Interaction Interface Pymol
e3vr4F4 D:X-1/2,-Y+1/2,-Z+1->C:x,y,z P-loop domains-related Interaction Interface Pymol