Domain ID e3vraD1

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  • A: alpha bundles
  • X: Transmembrane heme-binding four-helical bundle
  • H: Transmembrane heme-binding four-helical bundle
  • T: Fumarate reductase respiratory complex transmembrane subunits
  • F: CybS
UID: 001036749
Type: Automatic domain
Parent: e3sfdD1
Range: D:28-156
Ligands: AT5 EPH HEM
PDB: 3vra
PDB Description: Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial
UniProt: P92507
Hsap BLAST neighbor: O14521
Species: Ascaris suum

Structure of domain e3vraD1

Domains in the same chain:

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e3vraD1 D:28-156 Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Fumarate reductase respiratory complex transmembrane subunits

Domains in the same PDB:

e3vraA3 A:33-269,A:390-485 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e3vraA1 A:270-389 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
e3vraA2 A:486-645 Spectrin repeat-like Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
e3vraB4 B:33-138 beta-Grasp Ubiquitin-related Ubiquitin-like
e3vraB1 B:139-281 alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin
e3vraC1 C:34-186 Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Fumarate reductase respiratory complex transmembrane subunits
e3vraD1 D:28-156 Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Fumarate reductase respiratory complex transmembrane subunits
e3vraE2 E:33-269,E:390-485 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e3vraE1 E:270-389 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
e3vraE3 E:486-645 Spectrin repeat-like Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
e3vraF4 F:33-138 beta-Grasp Ubiquitin-related Ubiquitin-like
e3vraF1 F:139-281 alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin
e3vraG1 G:34-186 Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Fumarate reductase respiratory complex transmembrane subunits
e3vraH1 H:28-156 Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Fumarate reductase respiratory complex transmembrane subunits

Structural contacts of domain e3vraD1 of H-group "Transmembrane heme-binding four-helical bundle":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3vraC1 D:x,y,z->C:X,Y,Z Transmembrane heme-binding four-helical bundle Interaction Interface Pymol
e3vraH1 D:x,y,z->H:X-1,Y,Z Transmembrane heme-binding four-helical bundle Interaction Interface Pymol
e3vraB1 D:x,y,z->B:X,Y,Z alpha-helical ferredoxin Interaction Interface Pymol
e3vraB4 D:x,y,z->B:X,Y,Z Ubiquitin-related Interaction Interface Pymol
e3vraA3 D:x,y,z->A:X,Y,Z Rossmann-related Interaction Interface Pymol
e3vraE2 D:x,y,z->E:X,Y,Z Rossmann-related Interaction Interface Pymol