ECOD: domain e3vrbF5

Domain ID e3vrbF5

A: alpha arrays
X: alpha-helical ferredoxin-like
H: alpha-helical ferredoxin
T: alpha-helical ferredoxin
F: Fer4_17

UID:	001159251
Type:	Automatic domain
Parent:	e1nekB1
Range:	F:139-281
Ligands:	F3S FTN HEM SF4
PDB:	3vrb
PDB Description:	Iron-sulfur subunit of succinate dehydrogenase
UniProt:	O44074
Hsap BLAST neighbor:	P21912
Species:	Ascaris suum

Domains in the same chain:

Download Pymol

e3vrbF6	F:33-138	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e3vrbF5	F:139-281	alpha-helical ferredoxin-like	alpha-helical ferredoxin	alpha-helical ferredoxin

Domains in the same PDB:

e3vrbA2	A:33-269,A:390-485	Rossmann-like	Rossmann-related	FAD/NAD(P)-binding domain
e3vrbA3	A:270-389	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
e3vrbA1	A:486-645	Spectrin repeat-like	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
e3vrbB6	B:33-138	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e3vrbB5	B:139-281	alpha-helical ferredoxin-like	alpha-helical ferredoxin	alpha-helical ferredoxin
e3vrbC2	C:34-186	Transmembrane heme-binding four-helical bundle	Transmembrane heme-binding four-helical bundle	Fumarate reductase respiratory complex transmembrane subunits
e3vrbD2	D:28-156	Transmembrane heme-binding four-helical bundle	Transmembrane heme-binding four-helical bundle	Fumarate reductase respiratory complex transmembrane subunits
e3vrbE3	E:33-269,E:390-485	Rossmann-like	Rossmann-related	FAD/NAD(P)-binding domain
e3vrbE1	E:270-389	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
e3vrbE2	E:486-645	Spectrin repeat-like	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
e3vrbF6	F:33-138	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e3vrbF5	F:139-281	alpha-helical ferredoxin-like	alpha-helical ferredoxin	alpha-helical ferredoxin
e3vrbG2	G:34-183	Transmembrane heme-binding four-helical bundle	Transmembrane heme-binding four-helical bundle	Fumarate reductase respiratory complex transmembrane subunits
e3vrbH2	H:28-156	Transmembrane heme-binding four-helical bundle	Transmembrane heme-binding four-helical bundle	Fumarate reductase respiratory complex transmembrane subunits

Structural contacts of domain e3vrbF5 of H-group "alpha-helical ferredoxin":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3vrbE1	F:x,y,z->E:X,Y,Z	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain	Interaction Interface Pymol
e3vrbE3	F:x,y,z->E:X,Y,Z	Rossmann-related	Interaction Interface Pymol
e3vrbG2	F:X,Y,Z->G:x,y,z	Transmembrane heme-binding four-helical bundle	Interaction Interface Pymol
e3vrbH2	F:X,Y,Z->H:x,y,z	Transmembrane heme-binding four-helical bundle	Interaction Interface Pymol
e3vrbB6	F:x,y,z->B:-X+1,Y-1/2,-Z+1/2	Ubiquitin-related	Interaction Interface Pymol