Domain ID e3vthA7

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  • A: a+b complex topology
  • X: YrdC/RibB
  • H: YrdC/RibB
  • T: YrdC/RibB
  • F: Sua5_yciO_yrdC
UID: 001150073
Type: Automatic domain
Parent: e1hruA1
Range: A:192-390
Ligands: APC GOL MG PO4
PDB: 3vth
PDB Description: Hydrogenase maturation factor
UniProt: Q8RDB0
Species:

Structure of domain e3vthA7

Domains in the same chain:

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e3vthA9 A:3-105 Alpha-beta plaits Acylphosphatase-like Acylphosphatase-like
e3vthA5 A:106-141 Zinc finger domain in hydrogenase maturation protein HypF Zinc finger domain in hydrogenase maturation protein HypF Zinc finger domain in hydrogenase maturation protein HypF
e3vthA2 A:142-191 Zinc finger domain in hydrogenase maturation protein HypF Zinc finger domain in hydrogenase maturation protein HypF Zinc finger domain in hydrogenase maturation protein HypF
e3vthA7 A:192-390 YrdC/RibB YrdC/RibB YrdC/RibB
e3vthA10 A:391-495 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3vthA8 A:496-755 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like

Domains in the same PDB:

e3vthA9 A:3-105 Alpha-beta plaits Acylphosphatase-like Acylphosphatase-like
e3vthA5 A:106-141 Zinc finger domain in hydrogenase maturation protein HypF Zinc finger domain in hydrogenase maturation protein HypF Zinc finger domain in hydrogenase maturation protein HypF
e3vthA2 A:142-191 Zinc finger domain in hydrogenase maturation protein HypF Zinc finger domain in hydrogenase maturation protein HypF Zinc finger domain in hydrogenase maturation protein HypF
e3vthA7 A:192-390 YrdC/RibB YrdC/RibB YrdC/RibB
e3vthA10 A:391-495 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3vthA8 A:496-755 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3vthB2 B:103-141 Zinc finger domain in hydrogenase maturation protein HypF Zinc finger domain in hydrogenase maturation protein HypF Zinc finger domain in hydrogenase maturation protein HypF
e3vthB1 B:142-191 Zinc finger domain in hydrogenase maturation protein HypF Zinc finger domain in hydrogenase maturation protein HypF Zinc finger domain in hydrogenase maturation protein HypF
e3vthB3 B:201-390 YrdC/RibB YrdC/RibB YrdC/RibB
e3vthB5 B:391-498 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3vthB4 B:499-755 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like

Structural contacts of domain e3vthA7 of H-group "YrdC/RibB":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3vthB4 A:X-Y,X,Z-1/3->B:x,y,z Ribonuclease H-like Interaction Interface Pymol
e3vthA9 A:x,y,z->A:X,Y,Z-1 Acylphosphatase-like Interaction Interface Pymol