ECOD: domain e3zl8A1

Domain ID e3zl8A1

A: a/b three-layered sandwiches
X: P-loop domains-like
H: P-loop domains-related
T: P-loop containing nucleoside triphosphate hydrolases
F: Mur_ligase_M

UID:	001106390
Type:	Automatic domain
Parent:	e1j6uA2
Range:	A:81-289
Ligands:	ADP
PDB:	3zl8
PDB Description:	UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE
UniProt:	Q9WY78
Species:	Thermotoga maritima

Domains in the same chain:

Download Pymol

e3zl8A3	A:1-80	MurF and HprK N-domain-like	MurF and HprK N-domain-like	MurF and HprK N-domain-like
e3zl8A1	A:81-289	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3zl8A2	A:290-427	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain

Domains in the same PDB:

e3zl8A3	A:1-80	MurF and HprK N-domain-like	MurF and HprK N-domain-like	MurF and HprK N-domain-like
e3zl8A1	A:81-289	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3zl8A2	A:290-427	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain

Structural contacts of domain e3zl8A1 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3zl8A1	A:x,y,z->A:X-1/2,-Y-1/2,-Z	P-loop domains-related	Interaction Interface Pymol
e3zl8A3	A:x,y,z->A:X-1/2,-Y-1/2,-Z	MurF and HprK N-domain-like	Interaction Interface Pymol
e3zl8A3	A:X-1/2,-Y-1/2,-Z->A:x,y,z	MurF and HprK N-domain-like	Interaction Interface Pymol
e3zl8A1	A:X-1/2,-Y-1/2,-Z->A:x,y,z	P-loop domains-related	Interaction Interface Pymol
e3zl8A2	A:x,y,z->A:-X,Y-1/2,-Z-1/2	MurD-like peptide ligases, peptide-binding domain	Interaction Interface Pymol
e3zl8A3	A:x,y,z->A:X-1/2,-Y+1/2,-Z	MurF and HprK N-domain-like	Interaction Interface Pymol
e3zl8A3	A:X-1/2,-Y+1/2,-Z->A:x,y,z	MurF and HprK N-domain-like	Interaction Interface Pymol
e3zl8A2	A:x,y,z->A:X,Y-1,Z	MurD-like peptide ligases, peptide-binding domain	Interaction Interface Pymol
e3zl8A3	A:x,y,z->A:X,Y-1,Z	MurF and HprK N-domain-like	Interaction Interface Pymol