Domain ID e3zl8A2

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  • A: a/b three-layered sandwiches
  • X: MurD-like peptide ligases, peptide-binding domain
  • H: MurD-like peptide ligases, peptide-binding domain
  • T: MurD-like peptide ligases, peptide-binding domain
  • F: Mur_ligase_C
UID: 001106391
Type: Automatic domain
Parent: e1e8cA2
Range: A:290-427
Ligands: ADP GOL
PDB: 3zl8
PDB Description: UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE
UniProt: Q9WY78
Species: Thermotoga maritima

Structure of domain e3zl8A2

Structural contacts of domain e3zl8A2 of H-group "MurD-like peptide ligases, peptide-binding domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3zl8A2 A:x,y,z->A:-X,Y-1/2,-Z-1/2 MurD-like peptide ligases, peptide-binding domain Interaction Interface Pymol
e3zl8A2 A:-X,Y-1/2,-Z-1/2->A:x,y,z MurD-like peptide ligases, peptide-binding domain Interaction Interface Pymol
e3zl8A1 A:-X,Y-1/2,-Z-1/2->A:x,y,z P-loop domains-related Interaction Interface Pymol
e3zl8A3 A:x,y,z->A:X-1/2,-Y+1/2,-Z MurF and HprK N-domain-like Interaction Interface Pymol
e3zl8A1 A:X,Y-1,Z->A:x,y,z P-loop domains-related Interaction Interface Pymol