ECOD: domain e3zm5A2

Domain ID e3zm5A2

A: a/b three-layered sandwiches
X: MurD-like peptide ligases, peptide-binding domain
H: MurD-like peptide ligases, peptide-binding domain
T: MurD-like peptide ligases, peptide-binding domain
F: Mur_ligase_C

UID:	001064588
Type:	Automatic domain
Parent:	e1e8cA2
Range:	A:297-454
Ligands:	IGM
PDB:	3zm5
PDB Description:	UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE
UniProt:	Q8DNV6
Species:

Domain
In chain context
In PDB context

Structure of domain e3zm5A2

Domains in the same chain:

Download Pymol

e3zm5A3	A:1-98	MurF and HprK N-domain-like	MurF and HprK N-domain-like	MurF and HprK N-domain-like
e3zm5A1	A:99-296	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3zm5A2	A:297-454	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain

Domains in the same PDB:

e3zm5A3	A:1-98	MurF and HprK N-domain-like	MurF and HprK N-domain-like	MurF and HprK N-domain-like
e3zm5A1	A:99-296	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3zm5A2	A:297-454	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain

Structural contacts of domain e3zm5A2 of H-group "MurD-like peptide ligases, peptide-binding domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3zm5A1	A:x,y,z->A:-X,-X+Y,-Z-1/3	P-loop domains-related	Interaction Interface Pymol
e3zm5A2	A:x,y,z->A:-X,-X+Y,-Z-1/3	MurD-like peptide ligases, peptide-binding domain	Interaction Interface Pymol
e3zm5A2	A:-X,-X+Y,-Z-1/3->A:x,y,z	MurD-like peptide ligases, peptide-binding domain	Interaction Interface Pymol
e3zm5A1	A:-X,-X+Y,-Z-1/3->A:x,y,z	P-loop domains-related	Interaction Interface Pymol
e3zm5A3	A:x,y,z->A:X,X-Y+1,-Z+1/6	MurF and HprK N-domain-like	Interaction Interface Pymol
e3zm5A2	A:x,y,z->A:X,X-Y+1,-Z+1/6	MurD-like peptide ligases, peptide-binding domain	Interaction Interface Pymol
e3zm5A3	A:X,X-Y+1,-Z+1/6->A:x,y,z	MurF and HprK N-domain-like	Interaction Interface Pymol
e3zm5A2	A:X,X-Y+1,-Z+1/6->A:x,y,z	MurD-like peptide ligases, peptide-binding domain	Interaction Interface Pymol
e3zm5A1	A:x,y,z->A:X-Y,-Y+1,-Z	P-loop domains-related	Interaction Interface Pymol
e3zm5A1	A:x,y,z->A:X-Y,X,Z+1/6	P-loop domains-related	Interaction Interface Pymol
e3zm5A2	A:x,y,z->A:-Y,-X,-Z-1/6	MurD-like peptide ligases, peptide-binding domain	Interaction Interface Pymol
e3zm5A2	A:-Y,-X,-Z-1/6->A:x,y,z	MurD-like peptide ligases, peptide-binding domain	Interaction Interface Pymol