Domain ID e4a2iE2

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: Ribosomal_S5_C
UID: 000432041
Type: Automatic domain
Parent: e1pkpA2
Range: E:78-158
PDB: 4a2i
PDB Description: 30S RIBOSOMAL PROTEIN S5
UniProt: P0A7W1
Species: Escherichia coli

Structure of domain e4a2iE2

Domains in the same chain:

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e4a2iE1 E:9-77 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4a2iE2 E:78-158 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like

Domains in the same PDB:

e4a2iB1 B:8-118,B:143-225 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e4a2iC2 C:1-105 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4a2iC1 C:106-206 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4a2iD1 D:1-205 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4a2iE1 E:9-77 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4a2iE2 E:78-158 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4a2iF1 F:1-100 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4a2iG1 G:2-151 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4a2iH1 H:1-65 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4a2iH2 H:66-129 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4a2iI1 I:3-129 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4a2iJ1 J:5-102 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4a2iK1 K:12-128 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4a2iL1 L:1-123 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4a2iM1 M:1-114 HhH/H2TH H2TH H2TH
e4a2iN1 N:1-100 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4a2iO1 O:1-88 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4a2iP1 P:1-82 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4a2iQ1 Q:3-82 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4a2iR1 R:19-73 HTH HTH tri-helical
e4a2iS1 S:2-80 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e4a2iT1 T:2-86 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e4a2iV1 V:43-112 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4a2iV2 V:113-345 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases

Structural contacts of domain e4a2iE2 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4a2iH2 E:x,y,z->H:X,Y,Z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol
e4a2iH1 E:x,y,z->H:X,Y,Z Ribosomal protein S8, N-terminal domain Interaction Interface Pymol
e4a2iD1 E:X,Y,Z->D:x,y,z Ubiquitin-related Interaction Interface Pymol