ECOD: domain e4a3eB5

Domain ID e4a3eB5

A: beta barrels
X: cradle loop barrel
H: RIFT-related
T: double psi
F: RNA_pol_Rpb2_6

UID:	001508523
Type:	Automatic domain
Parent:	e1twfB1
Range:	B:814-850,B:975-1097
Ligands:	APC
PDB:	4a3e
PDB Description:	DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
UniProt:	P08518
Hsap BLAST neighbor:	P30876
Species:	Saccharomyces cerevisiae

Domains in the same chain:

Download Pymol

e4a3eB1	B:20-70,B:90-134,B:164-218,B:405-541	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4a3eB4	B:219-404	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e4a3eB6	B:542-630	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e4a3eB2	B:631-813	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e4a3eB5	B:814-850,B:975-1097	cradle loop barrel	RIFT-related	double psi
e4a3eB7	B:851-974	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4a3eB3	B:1098-1224	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase

Domains in the same PDB:

Structural contacts of domain e4a3eB5 of H-group "RIFT-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4a3eA2	B:x,y,z->A:X,Y,Z	second helical domain in RNA-polymerase beta-prime subunit	Interaction Interface Pymol
e4a3eA8	B:x,y,z->A:X,Y,Z	first helical domain in RNA-polymerase beta-prime subunit	Interaction Interface Pymol
e4a3eA6	B:x,y,z->A:X,Y,Z	RIFT-related	Interaction Interface Pymol
e4a3eC3	B:X,Y,Z->C:x,y,z	RBP11-like subunits of RNA polymerase	Interaction Interface Pymol
e4a3eC4	B:X,Y,Z->C:x,y,z	Insert subdomain of RNA polymerase alpha subunit	Interaction Interface Pymol
e4a3eJ1	B:X,Y,Z->J:x,y,z	RPB10	Interaction Interface Pymol
e4a3eK1	B:X,Y,Z->K:x,y,z	RBP11-like subunits of RNA polymerase	Interaction Interface Pymol

e4a3eA3	A:3-336	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e4a3eA6	A:337-374,A:436-519	cradle loop barrel	RIFT-related	double psi
e4a3eA7	A:375-435	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e4a3eA8	A:520-662	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e4a3eA2	A:663-871	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e4a3eA9	A:872-1059	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e4a3eA4	A:1060-1102,A:1301-1455	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e4a3eA5	A:1103-1131,A:1243-1300	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4a3eA1	A:1132-1242	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4a3eB1	B:20-70,B:90-134,B:164-218,B:405-541	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4a3eB4	B:219-404	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e4a3eB6	B:542-630	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e4a3eB2	B:631-813	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e4a3eB5	B:814-850,B:975-1097	cradle loop barrel	RIFT-related	double psi
e4a3eB7	B:851-974	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4a3eB3	B:1098-1224	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4a3eC3	C:3-41,C:173-268	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e4a3eC4	C:42-172	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e4a3eD1	D:3-71,D:131-221	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e4a3eE2	E:2-142	Restriction endonuclease-like	Eukaryotic RPB5 N-terminal domain	Eukaryotic RPB5 N-terminal domain
e4a3eE1	E:143-215	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e4a3eF1	F:72-155	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e4a3eG4	G:1-68	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e4a3eG3	G:69-171	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4a3eH1	H:2-146	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4a3eI1	I:2-49	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e4a3eI2	I:50-120	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e4a3eJ1	J:1-65	HTH	RPB10	RPB10
e4a3eK1	K:1-115	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e4a3eL1	L:25-70	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related