Domain ID e4a3fH1

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: RNA_pol_Rpb8
UID: 000434985
Type: Automatic domain
Parent: e1twfH1
Range: H:2-146
PDB: 4a3f
PDB Description: DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3
UniProt: P20436
Hsap BLAST neighbor: P52434
Species: Saccharomyces cerevisiae

Structure of domain e4a3fH1

Domains in the same chain:

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e4a3fH1 H:2-146 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Domains in the same PDB:

e4a3fA3 A:3-336 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e4a3fA6 A:337-374,A:436-519 cradle loop barrel RIFT-related double psi
e4a3fA7 A:375-435 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e4a3fA8 A:520-662 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e4a3fA2 A:663-871 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e4a3fA9 A:872-1059 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e4a3fA4 A:1060-1102,A:1301-1455 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e4a3fA5 A:1103-1131,A:1243-1300 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4a3fA1 A:1132-1242 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4a3fB1 B:20-70,B:90-134,B:164-218,B:405-541 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4a3fB6 B:219-404 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e4a3fB7 B:542-630 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e4a3fB3 B:631-813 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e4a3fB4 B:814-850,B:975-1097 cradle loop barrel RIFT-related double psi
e4a3fB2 B:851-974 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e4a3fB5 B:1098-1224 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4a3fC3 C:3-41,C:173-268 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e4a3fC4 C:42-172 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e4a3fD1 D:3-71,D:131-221 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4a3fE2 E:2-142 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e4a3fE1 E:143-215 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e4a3fF1 F:72-155 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e4a3fG4 G:1-68 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e4a3fG3 G:69-171 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4a3fH1 H:2-146 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4a3fI1 I:2-49 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4a3fI2 I:50-120 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4a3fJ1 J:1-65 HTH RPB10 RPB10
e4a3fK1 K:1-115 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e4a3fL1 L:25-70 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e4a3fH1 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4a3fA9 H:x,y,z->A:X,Y,Z third helical domain in yeast RNA-polymerase II beta-prime subunit Interaction Interface Pymol
e4a3fA2 H:x,y,z->A:X,Y,Z second helical domain in RNA-polymerase beta-prime subunit Interaction Interface Pymol
e4a3fA8 H:x,y,z->A:X,Y,Z first helical domain in RNA-polymerase beta-prime subunit Interaction Interface Pymol
e4a3fK1 H:X,Y,Z->K:x,y,z RBP11-like subunits of RNA polymerase Interaction Interface Pymol
e4a3fC3 H:x,y,z->C:X,Y,Z RBP11-like subunits of RNA polymerase Interaction Interface Pymol