ECOD: domain e4a3lL1

Domain ID e4a3lL1

A: few secondary structure elements
X: Rubredoxin-like
H: Rubredoxin-related
T: Rubredoxin-related
F: DNA_RNApol_7kD

UID:	000435080
Type:	Automatic domain
Parent:	e1twfL1
Range:	L:25-70
Ligands:	ZN
PDB:	4a3l
PDB Description:	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4
UniProt:	P40422
Hsap BLAST neighbor:	P53803
Species:	Saccharomyces cerevisiae

Domains in the same chain:

Download Pymol

e4a3lL1	L:25-70	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related

Domains in the same PDB:

Structural contacts of domain e4a3lL1 of H-group "Rubredoxin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4a3lB4	L:x,y,z->B:X,Y,Z	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Interaction Interface Pymol
e4a3lB3	L:x,y,z->B:X,Y,Z	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	Interaction Interface Pymol
e4a3lC4	L:x,y,z->C:X,Y,Z	Insert subdomain of RNA polymerase alpha subunit	Interaction Interface Pymol
e4a3lB4	L:x,y,z->B:X,-Y,-Z	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Interaction Interface Pymol
e4a3lL1	L:x,y,z->L:X,-Y,-Z	Rubredoxin-related	Interaction Interface Pymol
e4a3lL1	L:X,-Y,-Z->L:x,y,z	Rubredoxin-related	Interaction Interface Pymol
e4a3lJ1	L:x,y,z->J:X,Y,Z	RPB10	Interaction Interface Pymol

e4a3lA3	A:3-336	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e4a3lA6	A:337-374,A:436-519	cradle loop barrel	RIFT-related	double psi
e4a3lA7	A:375-435	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e4a3lA8	A:520-662	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e4a3lA2	A:663-871	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e4a3lA9	A:872-1059	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e4a3lA4	A:1060-1102,A:1301-1455	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e4a3lA5	A:1103-1131,A:1243-1300	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4a3lA1	A:1132-1242	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4a3lB3	B:20-70,B:90-134,B:164-218,B:405-541	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4a3lB1	B:219-404	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e4a3lB5	B:542-630	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e4a3lB7	B:631-813	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e4a3lB6	B:814-850,B:975-1097	cradle loop barrel	RIFT-related	double psi
e4a3lB4	B:851-974	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4a3lB2	B:1098-1224	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4a3lC3	C:3-41,C:173-268	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e4a3lC4	C:42-172	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e4a3lD1	D:3-71,D:131-221	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e4a3lE2	E:2-142	Restriction endonuclease-like	Eukaryotic RPB5 N-terminal domain	Eukaryotic RPB5 N-terminal domain
e4a3lE1	E:143-215	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e4a3lF1	F:72-155	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e4a3lG4	G:1-68	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e4a3lG3	G:69-171	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4a3lH1	H:2-146	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4a3lI1	I:2-49	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e4a3lI2	I:50-120	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e4a3lJ1	J:1-65	HTH	RPB10	RPB10
e4a3lK1	K:1-115	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e4a3lL1	L:25-70	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related