Domain ID e4a3mL1

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  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: DNA_RNApol_7kD
UID: 000435110
Type: Automatic domain
Parent: e1twfL1
Range: L:25-70
Ligands: ZN
PDB: 4a3m
PDB Description: DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4
UniProt: P40422
Hsap BLAST neighbor: P53803
Species: Saccharomyces cerevisiae

Structure of domain e4a3mL1

Domains in the same chain:

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e4a3mL1 L:25-70 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Domains in the same PDB:

e4a3mA3 A:3-336 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e4a3mA6 A:337-374,A:436-519 cradle loop barrel RIFT-related double psi
e4a3mA7 A:375-435 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e4a3mA8 A:520-662 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e4a3mA2 A:663-871 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e4a3mA9 A:872-1059 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e4a3mA4 A:1060-1102,A:1301-1455 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e4a3mA5 A:1103-1131,A:1243-1300 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4a3mA1 A:1132-1242 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4a3mB6 B:20-70,B:90-134,B:164-218,B:405-541 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4a3mB3 B:219-404 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e4a3mB2 B:542-630 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e4a3mB7 B:631-813 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e4a3mB5 B:814-850,B:975-1097 cradle loop barrel RIFT-related double psi
e4a3mB4 B:851-974 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e4a3mB1 B:1098-1224 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4a3mC3 C:3-41,C:173-268 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e4a3mC4 C:42-172 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e4a3mD1 D:3-71,D:131-221 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4a3mE2 E:2-142 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e4a3mE1 E:143-215 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e4a3mF1 F:72-155 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e4a3mG4 G:1-68 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e4a3mG3 G:69-171 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4a3mH1 H:2-146 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4a3mI1 I:2-49 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4a3mI2 I:50-120 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4a3mJ1 J:1-65 HTH RPB10 RPB10
e4a3mK1 K:1-115 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e4a3mL1 L:25-70 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e4a3mL1 of H-group "Rubredoxin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4a3mB4 L:x,y,z->B:X,Y,Z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol
e4a3mB6 L:x,y,z->B:X,Y,Z N-terminal domain in beta subunit of DNA dependent RNA-polymerase Interaction Interface Pymol
e4a3mC4 L:x,y,z->C:X,Y,Z Insert subdomain of RNA polymerase alpha subunit Interaction Interface Pymol
e4a3mB4 L:x,y,z->B:X,-Y,-Z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol
e4a3mJ1 L:x,y,z->J:X,Y,Z RPB10 Interaction Interface Pymol