Domain ID e4a5wB9

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  • A: few secondary structure elements
  • X: EGF-like
  • H: LDL receptor-like module
  • T: LDL receptor-like module
  • F: Ldl_recept_a
UID: 001508583
Type: Automatic domain
Parent: e3t5oA3
Range: B:137-178
Ligands: CA
PDB: 4a5w
PDB Description: COMPLEMENT COMPONENT C6
UniProt: P13671
Hsap BLAST neighbor: P13671
Species: Homo sapiens

Structure of domain e4a5wB9

Domains in the same chain:

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e4a5wB7 B:22-79 TSP-1 type 1 repeat TSP-1 type 1 repeat TSP-1 type 1 repeat
e4a5wB1 B:80-136 TSP-1 type 1 repeat TSP-1 type 1 repeat TSP-1 type 1 repeat
e4a5wB9 B:137-178 EGF-like LDL receptor-like module LDL receptor-like module
e4a5wB11 B:179-519 Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains
e4a5wB4 B:520-557 EGF-like EGF-related EGF/Laminin
e4a5wB2 B:558-632 TSP-1 type 1 repeat TSP-1 type 1 repeat TSP-1 type 1 repeat
e4a5wB6 B:633-701 EGF-like EGF-related Complement control module/SCR domain
e4a5wB3 B:702-767 EGF-like EGF-related Complement control module/SCR domain
e4a5wB12 B:786-853 Kazal-type serine protease inhibitors-like Kazal-type serine protease inhibitors Kazal-type serine protease inhibitors
e4a5wB10 B:854-881 EGF-like EGF-related EGF/Laminin
e4a5wB8 B:882-934 Kazal-type serine protease inhibitors-like Kazal-type serine protease inhibitors Kazal-type serine protease inhibitors

Domains in the same PDB:

e4a5wA1 A:22-121 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4a5wA2 A:122-222 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4a5wA3 A:223-348 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4a5wA4 A:349-459 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4a5wA5 A:460-565 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4a5wA6 A:566-611,A:766-821 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4a5wA7 A:822-932 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4a5wA8 A:933-985,A:1309-1369 jelly-roll Spermadhesin, CUB domain Spermadhesin, CUB domain
e4a5wA9 A:986-1308 Repetitive alpha hairpins alpha/alpha toroid alpha/alpha toroid
e4a5wA10 A:1370-1515 Immunoglobulin-like beta-sandwich Immunoglobulin-related Common fold of diphtheria toxin/transcription factors/cytochrome f
e4a5wA11 A:1516-1676 OB-fold TIMP-like TIMP-like
e4a5wB7 B:22-79 TSP-1 type 1 repeat TSP-1 type 1 repeat TSP-1 type 1 repeat
e4a5wB1 B:80-136 TSP-1 type 1 repeat TSP-1 type 1 repeat TSP-1 type 1 repeat
e4a5wB9 B:137-178 EGF-like LDL receptor-like module LDL receptor-like module
e4a5wB11 B:179-519 Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains
e4a5wB4 B:520-557 EGF-like EGF-related EGF/Laminin
e4a5wB2 B:558-632 TSP-1 type 1 repeat TSP-1 type 1 repeat TSP-1 type 1 repeat
e4a5wB6 B:633-701 EGF-like EGF-related Complement control module/SCR domain
e4a5wB3 B:702-767 EGF-like EGF-related Complement control module/SCR domain
e4a5wB12 B:786-853 Kazal-type serine protease inhibitors-like Kazal-type serine protease inhibitors Kazal-type serine protease inhibitors
e4a5wB10 B:854-881 EGF-like EGF-related EGF/Laminin
e4a5wB8 B:882-934 Kazal-type serine protease inhibitors-like Kazal-type serine protease inhibitors Kazal-type serine protease inhibitors

Structural contacts of domain e4a5wB9 of H-group "LDL receptor-like module":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4a5wA4 B:x,y,z->A:X,Y,Z Immunoglobulin-related Interaction Interface Pymol