Domain ID e4abrL1

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: Ribosom_S12_S23
UID: 000149054
Type: Automatic domain
Parent: e2uubL1
Range: L:1-129
PDB: 4abr
PDB Description:
Hsap BLAST neighbor: O15235
Species:

Structure of domain e4abrL1

Domains in the same chain:

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e4abrL1 L:1-129 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Domains in the same PDB:

e4abr22 2:1-123 OB-fold Small protein B (SmpB) Small protein B (SmpB)
e4abrC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4abrC1 C:107-208 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4abrE4 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4abrE3 E:73-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4abrF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4abrG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4abrH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4abrH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4abrJ1 J:1-101 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4abrK1 K:1-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4abrL1 L:1-129 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4abrN1 N:1-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4abrO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4abrP1 P:1-84 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4abrR1 R:19-88 HTH HTH tri-helical
e4abrT1 T:1-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e4abrZ2 Z:3-41,Z:67-212 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4abrZ4 Z:213-312 cradle loop barrel RIFT-related Alanine racemase-C
e4abrZ6 Z:313-405 cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain

Structural contacts of domain e4abrL1 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4abr22 L:X,Y,Z->2:x,y,z Small protein B (SmpB) Interaction Interface Pymol
e4abrH2 L:x,y,z->H:X,Y,Z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol