Domain ID e4acbB10

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  • A: a/b three-layered sandwiches
  • X: P-loop domains-like
  • H: P-loop domains-related
  • T: P-loop containing nucleoside triphosphate hydrolases
  • F: GTP_EFTU
UID: 001166974
Type: Automatic domain
Parent: e2c78A3
Range: B:1-176
Ligands: 5GP DXC GDP MG SO4
PDB: 4acb
PDB Description: TRANSLATION ELONGATION FACTOR SELB
UniProt: Q8J307
Hsap BLAST neighbor: P57772
Species: Methanococcus maripaludis

Structure of domain e4acbB10

Domains in the same chain:

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e4acbB10 B:1-176 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4acbB8 B:177-271 cradle loop barrel RIFT-related Alanine racemase-C
e4acbB2 B:272-387 cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain
e4acbB4 B:388-468 cradle loop barrel RIFT-related Alanine racemase-C

Domains in the same PDB:

e4acbA10 A:0-176 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4acbA8 A:177-271 cradle loop barrel RIFT-related Alanine racemase-C
e4acbA2 A:272-387 cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain
e4acbA4 A:388-468 cradle loop barrel RIFT-related Alanine racemase-C
e4acbB10 B:1-176 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4acbB8 B:177-271 cradle loop barrel RIFT-related Alanine racemase-C
e4acbB2 B:272-387 cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain
e4acbB4 B:388-468 cradle loop barrel RIFT-related Alanine racemase-C
e4acbC10 C:-2-173 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4acbC8 C:174-271 cradle loop barrel RIFT-related Alanine racemase-C
e4acbC2 C:272-387 cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain
e4acbC4 C:388-468 cradle loop barrel RIFT-related Alanine racemase-C
e4acbD10 D:2-176 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4acbD8 D:177-271 cradle loop barrel RIFT-related Alanine racemase-C
e4acbD2 D:272-387 cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain
e4acbD4 D:388-468 cradle loop barrel RIFT-related Alanine racemase-C

Structural contacts of domain e4acbB10 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4acbD10 B:X,Y,Z->D:x,y,z P-loop domains-related Interaction Interface Pymol
e4acbD2 B:X,Y,Z->D:x,y,z RIFT-related Interaction Interface Pymol
e4acbC8 B:X,X-Y-1,-Z->C:x,y,z RIFT-related Interaction Interface Pymol
e4acbC10 B:X,X-Y-1,-Z->C:x,y,z P-loop domains-related Interaction Interface Pymol
e4acbA4 B:x,y,z->A:-Y,X-Y,Z+1/3 RIFT-related Interaction Interface Pymol
e4acbA8 B:x,y,z->A:X,Y,Z RIFT-related Interaction Interface Pymol
e4acbA10 B:x,y,z->A:-Y,-X,-Z-1/3 P-loop domains-related Interaction Interface Pymol