Domain ID e4advD1

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  • A: a+b two layers
  • X: beta-Grasp
  • H: Ubiquitin-related
  • T: Alpha-L RNA-binding motif
  • F: Ribosomal_S4,S4
UID: 001552275
Type: Automatic domain
Parent: e4v4vAD1
Range: D:1-205
PDB: 4adv
PDB Description: 30S RIBOSOMAL PROTEIN S4
UniProt: P0A7V8
Species: Escherichia coli

Structure of domain e4advD1

Domains in the same chain:

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e4advD1 D:1-205 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif

Domains in the same PDB:

e4advB1 B:8-118,B:143-225 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e4advC1 C:1-105 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4advC2 C:106-206 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4advD1 D:1-205 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4advE4 E:9-76 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4advE3 E:77-158 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4advF1 F:1-100 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4advG1 G:1-151 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4advH1 H:1-65 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4advH2 H:66-129 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4advI1 I:3-129 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4advJ1 J:1-102 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4advK1 K:1-128 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4advL1 L:1-123 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4advM1 M:1-114 HhH/H2TH H2TH H2TH
e4advN1 N:1-100 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4advO1 O:1-88 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4advP1 P:1-82 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4advQ1 Q:3-82 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4advR1 R:19-73 HTH HTH tri-helical
e4advS1 S:2-80 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e4advT1 T:2-86 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e4advV1 V:17-201 Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases
e4advV3 V:202-268 HhH/H2TH H2TH H2TH

Structural contacts of domain e4advD1 of H-group "Ubiquitin-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4advE3 D:x,y,z->E:X,Y,Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol