Domain ID e4ahcA2

Download files:
  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: DNA_pol_B_exo1
UID: 001710091
Type: Automatic domain
Parent: e1tgoA6
Range: A:133-346
Ligands: GOL
PDB: 4ahc
PDB Description: DNA POLYMERASE
UniProt: P61875
Hsap BLAST neighbor: P28340
Species: Pyrococcus furiosus

Structure of domain e4ahcA2

Domains in the same chain:

Download Pymol

e4ahcA1 A:1-33,A:114-132 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4ahcA3 A:34-113 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4ahcA2 A:133-346 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4ahcA6 A:347-447,A:502-610 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4ahcA4 A:448-501 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4ahcA5 A:611-688,A:724-757 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e4ahcA1 A:1-33,A:114-132 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4ahcA3 A:34-113 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4ahcA2 A:133-346 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4ahcA6 A:347-447,A:502-610 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4ahcA4 A:448-501 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4ahcA5 A:611-688,A:724-757 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I
e4ahcB4 B:1-33,B:114-132 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4ahcB2 B:34-113 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4ahcB6 B:133-346 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4ahcB5 B:347-447,B:502-610 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4ahcB3 B:448-501 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4ahcB1 B:611-756 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e4ahcA2 of H-group "Ribonuclease H-like":

Sorry, the images are being generated.

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4ahcB3 A:X,Y,Z->B:x,y,z "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e4ahcA6 A:X,Y,Z-1->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e4ahcA3 A:x,y,z->A:X-1,Y,Z Family B DNA polymerase insertion domain Interaction Interface Pymol
e4ahcB5 A:X,Y,Z-1->B:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e4ahcB1 A:-X-1,Y-1/2,-Z->B:x,y,z "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol