Domain ID e4ailC2

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: DNA_pol_B_exo1
UID: 001710117
Type: Automatic domain
Parent: e1tgoA6
Range: C:133-346
PDB: 4ail
PDB Description: DNA POLYMERASE
UniProt: P61875
Hsap BLAST neighbor: P28340
Species: Pyrococcus furiosus

Structure of domain e4ailC2

Domains in the same chain:

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e4ailC6 C:1-33,C:114-132 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4ailC4 C:34-113 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4ailC2 C:133-346 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4ailC3 C:347-447,C:502-610 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4ailC1 C:448-501 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4ailC5 C:611-754 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e4ailC6 C:1-33,C:114-132 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4ailC4 C:34-113 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4ailC2 C:133-346 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4ailC3 C:347-447,C:502-610 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4ailC1 C:448-501 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4ailC5 C:611-754 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e4ailC2 of H-group "Ribonuclease H-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4ailC1 C:x,y,z->C:-X,Y,-Z+1/2 "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e4ailC1 C:-X,Y,-Z+1/2->C:x,y,z "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e4ailC3 C:X-1/2,Y+1/2,Z->C:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e4ailC3 C:x,y,z->C:-X+1/2,Y-1/2,-Z+1/2 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e4ailC4 C:x,y,z->C:X-1/2,Y-1/2,Z Family B DNA polymerase insertion domain Interaction Interface Pymol