Domain ID e4aqyE3

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: Ribosomal_S5_C
UID: 001277329
Type: Automatic domain
Parent: e1pkpA2
Range: E:73-154
PDB: 4aqy
PDB Description: 30S RIBOSOMAL PROTEIN S5
UniProt: Q5SHQ5
Species: Thermus thermophilus

Structure of domain e4aqyE3

Domains in the same chain:

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e4aqyE4 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4aqyE3 E:73-154 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like

Domains in the same PDB:

e4aqyB1 B:7-127,B:157-240 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e4aqyC1 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4aqyC2 C:107-208 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4aqyD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4aqyE4 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4aqyE3 E:73-154 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4aqyF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4aqyG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4aqyH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4aqyH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4aqyI1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4aqyJ1 J:2-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4aqyK1 K:1-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4aqyL1 L:1-129 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4aqyM1 M:2-126 HhH/H2TH H2TH H2TH
e4aqyN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4aqyO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4aqyP1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4aqyQ1 Q:2-105 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4aqyR1 R:16-88 HTH HTH tri-helical
e4aqyS1 S:2-81 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e4aqyT1 T:1-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e4aqyE3 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4aqyH1 E:X,Y,Z->H:x,y,z Ribosomal protein S8, N-terminal domain Interaction Interface Pymol
e4aqyH2 E:X,Y,Z->H:x,y,z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol
e4aqyE4 E:x,y,z->E:Y,X,-Z dsRNA-binding domain-like Interaction Interface Pymol
e4aqyE3 E:x,y,z->E:Y,X,-Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4aqyE4 E:Y,X,-Z->E:x,y,z dsRNA-binding domain-like Interaction Interface Pymol
e4aqyE3 E:Y,X,-Z->E:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4aqyD1 E:x,y,z->D:X,Y,Z Ubiquitin-related Interaction Interface Pymol