Domain ID e4b08A6

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: DNA_pol_B_exo1
UID: 001614103
Type: Automatic domain
Parent: e1tgoA6
Range: A:532-815
PDB: 4b08
PDB Description: DNA POLYMERASE ALPHA CATALYTIC SUBUNIT A
UniProt: P13382
Hsap BLAST neighbor: P09884
Species: Saccharomyces cerevisiae

Structure of domain e4b08A6

Domains in the same chain:

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e4b08A3 A:349-389,A:480-531 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4b08A1 A:390-479 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4b08A6 A:532-815 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4b08A5 A:848-903,A:959-1072 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4b08A2 A:904-958 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4b08A4 A:1073-1228 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e4b08A3 A:349-389,A:480-531 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4b08A1 A:390-479 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4b08A6 A:532-815 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4b08A5 A:848-903,A:959-1072 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4b08A2 A:904-958 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4b08A4 A:1073-1228 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e4b08A6 of H-group "Ribonuclease H-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4b08A6 A:x,y,z->A:-X,Y-1/2,-Z+1/2 Ribonuclease H-like Interaction Interface Pymol
e4b08A1 A:-X,Y-1/2,-Z+1/2->A:x,y,z Family B DNA polymerase insertion domain Interaction Interface Pymol
e4b08A6 A:-X,Y-1/2,-Z+1/2->A:x,y,z Ribonuclease H-like Interaction Interface Pymol
e4b08A3 A:-X,Y-1/2,-Z+1/2->A:x,y,z Nucleic acid-binding proteins Interaction Interface Pymol
e4b08A5 A:X-1,Y,Z->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e4b08A4 A:X-1,Y,Z->A:x,y,z "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol