Domain ID e4b1oE2

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  • A: a+b two layers
  • X: Dodecin subunit-like
  • H: Flavin-binding protein dodecin-like
  • T: Flavin-binding protein dodecin-like
  • F: SHS2_Rpb7-N
UID: 000989000
Type: Automatic domain
Parent: e1go3E2
Range: E:1-78
PDB: 4b1o
PDB Description:
Hsap BLAST neighbor: Q9Y535
Species:

Structure of domain e4b1oE2

Domains in the same chain:

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e4b1oE2 E:1-78 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e4b1oE3 E:79-178 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Domains in the same PDB:

e4b1oB5 B:7-170,B:345-475 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4b1oB6 B:171-344 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e4b1oB3 B:476-575 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e4b1oB4 B:576-715 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e4b1oB1 B:716-752,B:876-998 cradle loop barrel RIFT-related double psi
e4b1oB7 B:753-875 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e4b1oB2 B:999-1125 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4b1oC6 C:64-100,C:258-394 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e4b1oC4 C:101-130,C:214-257 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4b1oD1 D:2-36,D:159-263 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e4b1oD2 D:37-158 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e4b1oE2 E:1-78 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e4b1oE3 E:79-178 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4b1oF1 F:1-105 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4b1oG2 G:5-117 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4b1oH1 H:1-76 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e4b1oK2 K:11-94 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e4b1oL1 L:1-91 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e4b1oN1 N:1-65 HTH RPB10 RPB10
e4b1oP2 P:5-48 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4b1oQ1 Q:32-81 YqgQ-like YqgQ-like YqgQ-like

Structural contacts of domain e4b1oE2 of H-group "Flavin-binding protein dodecin-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4b1oF1 E:X,Y,Z->F:x,y,z SAM/DNA-glycosylase Interaction Interface Pymol
e4b1oC6 E:x,y,z->C:X,Y,Z central helical domain in RNA-polymerase beta-prime subunit Interaction Interface Pymol
e4b1oK2 E:X,Y,Z->K:x,y,z RPB6/omega subunit-like Interaction Interface Pymol
e4b1oB2 E:x,y,z->B:X,Y,Z C-terminal domain in beta subunit of DNA dependent RNA-polymerase Interaction Interface Pymol