Domain ID e4b3mM1

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  • A: alpha arrays
  • X: HhH/H2TH
  • H: H2TH
  • T: H2TH
  • F: Ribosomal_S13
UID: 001552287
Type: Automatic domain
Parent: e4v4vAM1
Range: M:1-125
Ligands: MG
PDB: 4b3m
PDB Description: 30S RIBOSOMAL PROTEIN S13
UniProt: P80377
Hsap BLAST neighbor: P62269
Species:

Structure of domain e4b3mM1

Domains in the same chain:

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e4b3mM1 M:1-125 HhH/H2TH H2TH H2TH

Domains in the same PDB:

e4b3mB1 B:1-121,B:151-235 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e4b3mC2 C:1-104 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4b3mC1 C:105-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4b3mD1 D:1-208 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4b3mE2 E:1-69 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4b3mE1 E:70-151 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4b3mF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4b3mG1 G:1-155 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4b3mH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4b3mH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4b3mI1 I:1-127 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4b3mJ1 J:1-99 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4b3mK1 K:1-119 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4b3mL1 L:1-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4b3mM1 M:1-125 HhH/H2TH H2TH H2TH
e4b3mN1 N:1-60 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4b3mO1 O:1-88 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4b3mP1 P:1-84 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4b3mQ1 Q:1-104 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4b3mR1 R:1-73 HTH HTH tri-helical
e4b3mS1 S:1-81 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e4b3mT1 T:1-99 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e4b3mM1 of H-group "H2TH":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4b3mS1 M:X,Y,Z->S:x,y,z Ribosomal protein S19 Interaction Interface Pymol
e4b3mI1 M:x,y,z->I:X,Y,Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol