Domain ID e4b3sD1

Download files:
  • A: a+b two layers
  • X: beta-Grasp
  • H: Ubiquitin-related
  • T: Alpha-L RNA-binding motif
  • F: Ribosomal_S4,S4
UID: 001549689
Type: Automatic domain
Parent: e4v4vAD1
Range: D:1-208
Ligands: ZN
PDB: 4b3s
PDB Description: 30S RIBOSOMAL PROTEIN S4
UniProt: P80373
Species:

Structure of domain e4b3sD1

Domains in the same chain:

Download Pymol

e4b3sD1 D:1-208 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif

Domains in the same PDB:

e4b3sB1 B:1-121,B:151-235 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e4b3sC2 C:1-104 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4b3sC1 C:105-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4b3sD1 D:1-208 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4b3sE2 E:1-69 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4b3sE1 E:70-151 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4b3sF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4b3sG1 G:1-155 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4b3sH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4b3sH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4b3sI1 I:1-127 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4b3sJ1 J:1-99 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4b3sK1 K:1-119 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4b3sL1 L:1-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4b3sM1 M:1-125 HhH/H2TH H2TH H2TH
e4b3sN1 N:1-60 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4b3sO1 O:1-88 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4b3sP1 P:1-84 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4b3sQ1 Q:1-104 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4b3sR1 R:1-73 HTH HTH tri-helical
e4b3sS1 S:1-81 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e4b3sT1 T:1-99 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e4b3sD1 of H-group "Ubiquitin-related":

Sorry, the images are being generated.

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4b3sH1 D:Y,X,-Z->H:x,y,z Ribosomal protein S8, N-terminal domain Interaction Interface Pymol
e4b3sE1 D:X,Y,Z->E:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol