Domain ID e4b8fY8

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: EF-G C-terminal domain-like
  • T: EF-G C-terminal domain-like
  • F: EFG_III
UID: 001231429
Type: Automatic domain
Parent: e1fnmA2
Range: Y:402-475
Ligands: FUA
PDB: 4b8f
PDB Description:
Hsap BLAST neighbor: Q96RP9
Species:

Structure of domain e4b8fY8

Domains in the same chain:

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e4b8fY9 Y:4-38,Y:67-284 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4b8fY7 Y:285-401 cradle loop barrel RIFT-related Alanine racemase-C
e4b8fY8 Y:402-475 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like
e4b8fY10 Y:476-585 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4b8fY6 Y:586-690 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like

Domains in the same PDB:

e4b8fC2 C:1-105 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4b8fC1 C:106-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4b8fE4 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4b8fE3 E:73-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4b8fF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4b8fG1 G:1-154 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4b8fH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4b8fH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4b8fJ1 J:1-96 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4b8fK2 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4b8fL1 L:4-124 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4b8fN1 N:1-59 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4b8fO2 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4b8fP1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4b8fR2 R:19-88 HTH HTH tri-helical
e4b8fT1 T:1-92 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e4b8fY9 Y:4-38,Y:67-284 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4b8fY7 Y:285-401 cradle loop barrel RIFT-related Alanine racemase-C
e4b8fY8 Y:402-475 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like
e4b8fY10 Y:476-585 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4b8fY6 Y:586-690 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like

Structural contacts of domain e4b8fY8 of H-group "EF-G C-terminal domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4b8fL1 Y:x,y,z->L:X,Y,Z Nucleic acid-binding proteins Interaction Interface Pymol