Domain ID e4bdpA3

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Adenylyl and guanylyl cyclase catalytic domain-like
  • T: Adenylyl and guanylyl cyclase catalytic domain-like
  • F: DNA_pol_A
UID: 000066086
Type: Automatic domain
Parent: e2hhvA3
Range: A:643-667,A:792-875
Ligands: MG SO4
PDB: 4bdp
PDB Description: PROTEIN (DNA POLYMERASE I)
UniProt: P52026
Hsap BLAST neighbor: O75417
Species: Geobacillus stearothermophilus

Structure of domain e4bdpA3

Structural contacts of domain e4bdpA3 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4bdpA4 A:-X,Y-1/2,-Z+1/2->A:x,y,z Ribonuclease H-like Interaction Interface Pymol
e4bdpA1 A:-X,Y-1/2,-Z+1/2->A:x,y,z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e4bdpA1 A:x,y,z->A:-X+1/2,-Y+1,Z-1/2 helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e4bdpA2 A:x,y,z->A:-X+1/2,-Y+1,Z-1/2 "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol