Domain ID e4bocA1

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  • A: alpha arrays
  • X: helical bundle in Bacillus stearothermophilus-like DNA polymerase I
  • H: helical bundle in Bacillus stearothermophilus-like DNA polymerase I
  • T: helical bundle in Bacillus stearothermophilus-like DNA polymerase I
  • F: RNA_pol
UID: 001851588
Type: Automatic domain
Parent: e1mswD1
Range: A:903-1085
PDB: 4boc
PDB Description: DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL
UniProt: O00411
Hsap BLAST neighbor: O00411
Species: Homo sapiens

Structure of domain e4bocA1

Domains in the same chain:

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e4bocA6 A:218-405 Repetitive alpha hairpins ARM repeat ARM repeat
e4bocA7 A:397-643 HTH HTH HTH in T7 RNA polymerase
e4bocA5 A:644-829 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4bocA2 A:830-902 inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase
e4bocA1 A:903-1085 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e4bocA4 A:1107-1230 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like

Domains in the same PDB:

e4bocA6 A:218-405 Repetitive alpha hairpins ARM repeat ARM repeat
e4bocA7 A:397-643 HTH HTH HTH in T7 RNA polymerase
e4bocA5 A:644-829 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4bocA2 A:830-902 inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase
e4bocA1 A:903-1085 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e4bocA4 A:1107-1230 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like

Structural contacts of domain e4bocA1 of H-group "helical bundle in Bacillus stearothermophilus-like DNA polymerase I":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4bocA6 A:x,y,z->A:-Z+1/2,-X+3/2,Y-1/2 ARM repeat Interaction Interface Pymol
e4bocA6 A:x,y,z->A:-Z+1/2,-X+3/2,Y-1/2 ARM repeat Interaction Interface Pymol
e4bocA2 A:x,y,z->A:Z,X+1,Y-1 inserted helical bundle subdomain in T7 RNA polymerase Interaction Interface Pymol
e4bocA1 A:x,y,z->A:Z,X+1,Y-1 helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e4bocA1 A:Z,X+1,Y-1->A:x,y,z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol