Domain ID e4bomB7

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  • A: beta complex topology
  • X: Viral glycoprotein ectodomain-like
  • H: Viral glycoprotein ectodomain-like
  • T: Viral glycoprotein ectodomain-like
  • F: Glycoprotein_B
UID: 001149113
Type: Automatic domain
Parent: e2gumA3
Range: B:103-138,B:485-724
PDB: 4bom
PDB Description: ENVELOPE GLYCOPROTEIN B
UniProt: P06437
Species: Human herpesvirus 1

Structure of domain e4bomB7

Domains in the same chain:

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e4bomB7 B:103-138,B:485-724 Viral glycoprotein ectodomain-like Viral glycoprotein ectodomain-like Viral glycoprotein ectodomain-like
e4bomB9 B:139-152,B:365-484 PH domain-like second barrel domain in viral glycoproteins second barrel domain in viral glycoproteins
e4bomB8 B:153-364 PH domain-like first barrel domain in viral glycoproteins first barrel domain in viral glycoproteins

Domains in the same PDB:

e4bomA7 A:103-138,A:485-724 Viral glycoprotein ectodomain-like Viral glycoprotein ectodomain-like Viral glycoprotein ectodomain-like
e4bomA9 A:139-152,A:365-484 PH domain-like second barrel domain in viral glycoproteins second barrel domain in viral glycoproteins
e4bomA8 A:153-364 PH domain-like first barrel domain in viral glycoproteins first barrel domain in viral glycoproteins
e4bomB7 B:103-138,B:485-724 Viral glycoprotein ectodomain-like Viral glycoprotein ectodomain-like Viral glycoprotein ectodomain-like
e4bomB9 B:139-152,B:365-484 PH domain-like second barrel domain in viral glycoproteins second barrel domain in viral glycoproteins
e4bomB8 B:153-364 PH domain-like first barrel domain in viral glycoproteins first barrel domain in viral glycoproteins
e4bomC7 C:103-138,C:485-724 Viral glycoprotein ectodomain-like Viral glycoprotein ectodomain-like Viral glycoprotein ectodomain-like
e4bomC9 C:139-152,C:365-484 PH domain-like second barrel domain in viral glycoproteins second barrel domain in viral glycoproteins
e4bomC8 C:153-364 PH domain-like first barrel domain in viral glycoproteins first barrel domain in viral glycoproteins

Structural contacts of domain e4bomB7 of H-group "Viral glycoprotein ectodomain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4bomC7 B:x,y,z->C:X,Y,Z Viral glycoprotein ectodomain-like Interaction Interface Pymol
e4bomC8 B:x,y,z->C:X,Y,Z first barrel domain in viral glycoproteins Interaction Interface Pymol
e4bomC9 B:x,y,z->C:X,Y,Z second barrel domain in viral glycoproteins Interaction Interface Pymol
e4bomA8 B:X,Y,Z->A:x,y,z first barrel domain in viral glycoproteins Interaction Interface Pymol
e4bomA7 B:X,Y,Z->A:x,y,z Viral glycoprotein ectodomain-like Interaction Interface Pymol