Domain ID e4bomB9

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  • A: beta barrels
  • X: PH domain-like
  • H: second barrel domain in viral glycoproteins
  • T: second barrel domain in viral glycoproteins
  • F: Glycoprot_B_PH2
UID: 001149115
Type: Automatic domain
Parent: e2gumA2
Range: B:139-152,B:365-484
PDB: 4bom
PDB Description: ENVELOPE GLYCOPROTEIN B
UniProt: P06437
Species: Human herpesvirus 1

Structure of domain e4bomB9

Domains in the same chain:

Download Pymol

e4bomB7 B:103-138,B:485-724 Viral glycoprotein ectodomain-like Viral glycoprotein ectodomain-like Viral glycoprotein ectodomain-like
e4bomB9 B:139-152,B:365-484 PH domain-like second barrel domain in viral glycoproteins second barrel domain in viral glycoproteins
e4bomB8 B:153-364 PH domain-like first barrel domain in viral glycoproteins first barrel domain in viral glycoproteins

Domains in the same PDB:

e4bomA7 A:103-138,A:485-724 Viral glycoprotein ectodomain-like Viral glycoprotein ectodomain-like Viral glycoprotein ectodomain-like
e4bomA9 A:139-152,A:365-484 PH domain-like second barrel domain in viral glycoproteins second barrel domain in viral glycoproteins
e4bomA8 A:153-364 PH domain-like first barrel domain in viral glycoproteins first barrel domain in viral glycoproteins
e4bomB7 B:103-138,B:485-724 Viral glycoprotein ectodomain-like Viral glycoprotein ectodomain-like Viral glycoprotein ectodomain-like
e4bomB9 B:139-152,B:365-484 PH domain-like second barrel domain in viral glycoproteins second barrel domain in viral glycoproteins
e4bomB8 B:153-364 PH domain-like first barrel domain in viral glycoproteins first barrel domain in viral glycoproteins
e4bomC7 C:103-138,C:485-724 Viral glycoprotein ectodomain-like Viral glycoprotein ectodomain-like Viral glycoprotein ectodomain-like
e4bomC9 C:139-152,C:365-484 PH domain-like second barrel domain in viral glycoproteins second barrel domain in viral glycoproteins
e4bomC8 C:153-364 PH domain-like first barrel domain in viral glycoproteins first barrel domain in viral glycoproteins

Structural contacts of domain e4bomB9 of H-group "second barrel domain in viral glycoproteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4bomC7 B:x,y,z->C:X,Y,Z Viral glycoprotein ectodomain-like Interaction Interface Pymol
e4bomA7 B:X,Y,Z->A:x,y,z Viral glycoprotein ectodomain-like Interaction Interface Pymol