Domain ID e4bpnH1

Download files:
  • A: a+b two layers
  • X: R3H domain-like
  • H: Ribosomal protein S8, N-terminal domain
  • T: Ribosomal protein S8, N-terminal domain
  • F: Ribosomal_S8
UID: 001066572
Type: Automatic domain
Parent: e1i6uA1
Range: H:2-67
PDB: 4bpn
PDB Description:
Hsap BLAST neighbor: P62244
Species:

Structure of domain e4bpnH1

Domains in the same chain:

Download Pymol

e4bpnH1 H:2-67 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4bpnH2 H:68-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain

Domains in the same PDB:

e4bpn01 0:18-116 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4bpn11 1:3-68 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4bpn21 2:2-208 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e4bpn31 3:2-109 Alpha-lytic protease prodomain-like Ribosome-binding factor A (RbfA)-related Ribosome-binding factor A (RbfA)-related
e4bpn32 3:110-197 Alpha-lytic protease prodomain-like Ribosome-binding factor A (RbfA)-related Ribosome-binding factor A (RbfA)-related
e4bpn41 4:21-116 Ribosomal protein L25-like 40S ribosomal protein S3A N-terminal domain 40S ribosomal protein S3A N-terminal domain
e4bpn42 4:117-241 T-fold 40S ribosomal protein S3A C-terminal domain 40S ribosomal protein S3A C-terminal domain
e4bpn51 5:2-101 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4bpn62 6:26-81 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4bpn71 7:2-102 HTH HTH winged
e4bpn81 8:37-115 HTH HTH winged
e4bpn92 9:95-164 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4bpnC3 C:4-103 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4bpnC1 C:95-231 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4bpnF1 F:13-101 Glucose permease domain IIB-like eIF1-like eIF1-like
e4bpnG1 G:9-200 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4bpnH1 H:2-67 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4bpnH2 H:68-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4bpnJ1 J:13-120 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4bpnK1 K:12-151 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4bpnL1 L:2-141 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4bpnN1 N:2-55 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4bpnO2 O:2-84 HTH 40S ribosomal protein S13 N-terminal domain 40S ribosomal protein S13 N-terminal domain
e4bpnO1 O:85-153 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4bpnP1 P:2-149 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e4bpnR1 R:6-343 beta-propeller-like beta-propeller 7-bladed
e4bpnT1 T:2-155 HTH HTH winged
e4bpnU1 U:3-126 Bacillus chorismate mutase-like L30e-like L30e-like
e4bpnW2 W:2-118 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4bpnW1 W:119-177 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4bpnW3 W:178-260 SH3 SH3 SH3
e4bpnY1 Y:1-228 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like

Structural contacts of domain e4bpnH1 of H-group "Ribosomal protein S8, N-terminal domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4bpn32 H:x,y,z->3:X,Y,Z Ribosome-binding factor A (RbfA)-related Interaction Interface Pymol
e4bpnO2 H:X,Y,Z->O:x,y,z 40S ribosomal protein S13 N-terminal domain Interaction Interface Pymol