Domain ID e4bpo32

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  • A: a+b two layers
  • X: Alpha-lytic protease prodomain-like
  • H: Ribosome-binding factor A (RbfA)-related
  • T: Ribosome-binding factor A (RbfA)-related
  • F: Ribosomal_S7e
UID: 001280878
Type: Automatic domain
Parent: e2xzm32
Range: 3:110-197
PDB: 4bpo
PDB Description:
Hsap BLAST neighbor: P62081
Species:

Structure of domain e4bpo32

Domains in the same chain:

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e4bpo31 3:2-109 Alpha-lytic protease prodomain-like Ribosome-binding factor A (RbfA)-related Ribosome-binding factor A (RbfA)-related
e4bpo32 3:110-197 Alpha-lytic protease prodomain-like Ribosome-binding factor A (RbfA)-related Ribosome-binding factor A (RbfA)-related

Domains in the same PDB:

e4bpo01 0:18-116 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4bpo11 1:3-68 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4bpo21 2:2-208 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e4bpo31 3:2-109 Alpha-lytic protease prodomain-like Ribosome-binding factor A (RbfA)-related Ribosome-binding factor A (RbfA)-related
e4bpo32 3:110-197 Alpha-lytic protease prodomain-like Ribosome-binding factor A (RbfA)-related Ribosome-binding factor A (RbfA)-related
e4bpo41 4:21-116 Ribosomal protein L25-like 40S ribosomal protein S3A N-terminal domain 40S ribosomal protein S3A N-terminal domain
e4bpo42 4:117-241 T-fold 40S ribosomal protein S3A C-terminal domain 40S ribosomal protein S3A C-terminal domain
e4bpo51 5:2-101 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4bpo62 6:26-81 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4bpo71 7:2-102 HTH HTH winged
e4bpo81 8:37-115 HTH HTH winged
e4bpo91 9:72-140 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4bpoC3 C:4-103 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4bpoC1 C:95-231 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4bpoF1 F:13-101 Glucose permease domain IIB-like eIF1-like eIF1-like
e4bpoG1 G:9-200 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4bpoH1 H:2-67 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4bpoH2 H:68-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4bpoJ1 J:13-120 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4bpoK1 K:12-151 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4bpoL1 L:2-141 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4bpoN1 N:2-55 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4bpoO2 O:2-84 HTH 40S ribosomal protein S13 N-terminal domain 40S ribosomal protein S13 N-terminal domain
e4bpoO1 O:85-153 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4bpoP1 P:2-149 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e4bpoR1 R:6-343 beta-propeller-like beta-propeller 7-bladed
e4bpoT1 T:2-155 HTH HTH winged
e4bpoU1 U:3-126 Bacillus chorismate mutase-like L30e-like L30e-like
e4bpoW2 W:2-118 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4bpoW1 W:119-177 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4bpoW3 W:178-260 SH3 SH3 SH3
e4bpoY1 Y:1-228 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like

Structural contacts of domain e4bpo32 of H-group "Ribosome-binding factor A (RbfA)-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4bpo62 3:X,Y,Z->6:x,y,z Rubredoxin-related Interaction Interface Pymol
e4bpoH1 3:X,Y,Z->H:x,y,z Ribosomal protein S8, N-terminal domain Interaction Interface Pymol
e4bpoO2 3:X,Y,Z->O:x,y,z 40S ribosomal protein S13 N-terminal domain Interaction Interface Pymol