Domain ID e4bppK1

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: Ribosomal_S11
UID: 001066658
Type: Automatic domain
Parent: e2uubK1
Range: K:12-151
Ligands: MG
PDB: 4bpp
PDB Description:
Hsap BLAST neighbor: P62263
Species:

Structure of domain e4bppK1

Domains in the same chain:

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e4bppK1 K:12-151 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like

Domains in the same PDB:

e4bpp01 0:18-116 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4bpp11 1:3-68 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4bpp21 2:2-208 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e4bpp31 3:2-109 Alpha-lytic protease prodomain-like Ribosome-binding factor A (RbfA)-related Ribosome-binding factor A (RbfA)-related
e4bpp32 3:110-197 Alpha-lytic protease prodomain-like Ribosome-binding factor A (RbfA)-related Ribosome-binding factor A (RbfA)-related
e4bpp41 4:21-116 Ribosomal protein L25-like 40S ribosomal protein S3A N-terminal domain 40S ribosomal protein S3A N-terminal domain
e4bpp42 4:117-241 T-fold 40S ribosomal protein S3A C-terminal domain 40S ribosomal protein S3A C-terminal domain
e4bpp51 5:2-101 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4bpp62 6:26-81 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4bpp71 7:2-102 HTH HTH winged
e4bpp81 8:37-115 HTH HTH winged
e4bpp91 9:72-140 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4bppC3 C:4-103 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4bppC1 C:95-231 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4bppF1 F:13-101 Glucose permease domain IIB-like eIF1-like eIF1-like
e4bppG1 G:9-200 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4bppH1 H:2-67 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4bppH2 H:68-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4bppJ1 J:13-120 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4bppK1 K:12-151 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4bppL1 L:2-141 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4bppN1 N:2-55 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4bppO2 O:2-84 HTH 40S ribosomal protein S13 N-terminal domain 40S ribosomal protein S13 N-terminal domain
e4bppO1 O:85-153 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4bppP1 P:2-149 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e4bppR1 R:6-343 beta-propeller-like beta-propeller 7-bladed
e4bppT1 T:2-155 HTH HTH winged
e4bppU1 U:3-126 Bacillus chorismate mutase-like L30e-like L30e-like
e4bppW2 W:2-118 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4bppW1 W:119-177 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4bppW3 W:178-260 SH3 SH3 SH3
e4bppY1 Y:1-228 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like

Structural contacts of domain e4bppK1 of H-group "Ribonuclease H-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4bpp41 K:x,y,z->4:X,Y,Z 40S ribosomal protein S3A N-terminal domain Interaction Interface Pymol
e4bpp51 K:x,y,z->5:X,Y,Z LIM domain-like Interaction Interface Pymol
e4bpp11 K:x,y,z->1:X,Y,Z Nucleic acid-binding proteins Interaction Interface Pymol
e4bppG1 K:x,y,z->G:X,Y,Z Ribosomal protein S7 Interaction Interface Pymol