ECOD: domain e4bubA1

Domain ID e4bubA1

A: a/b three-layered sandwiches
X: MurD-like peptide ligases, peptide-binding domain
H: MurD-like peptide ligases, peptide-binding domain
T: MurD-like peptide ligases, peptide-binding domain
F: Mur_ligase_C

UID:	001069991
Type:	Automatic domain
Parent:	e1e8cA2
Range:	A:324-485
Ligands:	ADP
PDB:	4bub
PDB Description:	UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--LD-LYSINE LIGASE
UniProt:	Q9WY79
Species:	Thermotoga maritima

Domain
In chain context
In PDB context

Structure of domain e4bubA1

Domains in the same chain:

Download Pymol

e4bubA3	A:1-98	MurF and HprK N-domain-like	MurF and HprK N-domain-like	MurF and HprK N-domain-like
e4bubA2	A:99-323	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4bubA1	A:324-485	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain

Domains in the same PDB:

e4bubA3	A:1-98	MurF and HprK N-domain-like	MurF and HprK N-domain-like	MurF and HprK N-domain-like
e4bubA2	A:99-323	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4bubA1	A:324-485	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain
e4bubB2	B:1-95	MurF and HprK N-domain-like	MurF and HprK N-domain-like	MurF and HprK N-domain-like
e4bubB3	B:96-323	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4bubB1	B:324-485	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain

Structural contacts of domain e4bubA1 of H-group "MurD-like peptide ligases, peptide-binding domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4bubB3	A:X,Y,Z->B:x,y,z	P-loop domains-related	Interaction Interface Pymol
e4bubB1	A:x,y,z->B:X-1,Y,Z	MurD-like peptide ligases, peptide-binding domain	Interaction Interface Pymol
e4bubB2	A:X-Y,X,Z+1/6->B:x,y,z	MurF and HprK N-domain-like	Interaction Interface Pymol
e4bubA3	A:x,y,z->A:X-1,Y-1,Z	MurF and HprK N-domain-like	Interaction Interface Pymol