ECOD: domain e4bucB1

Domain ID e4bucB1

A: a/b three-layered sandwiches
X: MurD-like peptide ligases, peptide-binding domain
H: MurD-like peptide ligases, peptide-binding domain
T: MurD-like peptide ligases, peptide-binding domain
F: Mur_ligase_C

UID:	001069994
Type:	Automatic domain
Parent:	e1e8cA2
Range:	B:309-448
Ligands:	GOL PO4
PDB:	4buc
PDB Description:	UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
UniProt:	Q9WY76
Species:	Thermotoga maritima

Domain
In chain context
In PDB context

Structure of domain e4bucB1

Domains in the same chain:

Download Pymol

e4bucB3	B:16-110	Rossmann-like	Rossmann-related	MurCD/PglD N-terminal domain-like
e4bucB2	B:111-308	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4bucB1	B:309-448	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain

Domains in the same PDB:

e4bucA3	A:16-110	Rossmann-like	Rossmann-related	MurCD/PglD N-terminal domain-like
e4bucA2	A:111-308	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4bucA1	A:309-448	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain
e4bucB3	B:16-110	Rossmann-like	Rossmann-related	MurCD/PglD N-terminal domain-like
e4bucB2	B:111-308	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4bucB1	B:309-448	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain

Structural contacts of domain e4bucB1 of H-group "MurD-like peptide ligases, peptide-binding domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4bucA1	B:X-1,Y,Z->A:x,y,z	MurD-like peptide ligases, peptide-binding domain	Interaction Interface Pymol
e4bucA1	B:x,y,z->A:X,Y,Z	MurD-like peptide ligases, peptide-binding domain	Interaction Interface Pymol