Domain ID e4by9C4

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  • A: alpha arrays
  • X: HhH/H2TH
  • H: SAM/DNA-glycosylase
  • T: Nop C-terminal domain
  • F: Nop
UID: 001685454
Type: Automatic domain
Parent: e1nt2B2
Range: C:251-366
PDB: 4by9
PDB Description: NOP5/NOP56 RELATED PROTEIN
UniProt: Q8U4M1
Hsap BLAST neighbor: O00567
Species: Pyrococcus furiosus

Structure of domain e4by9C4

Domains in the same chain:

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e4by9C3 C:1-119 Nop N-terminal domain Nop N-terminal domain Nop N-terminal domain
e4by9C2 C:120-250 Nop N-terminal domain Nop N-terminal domain Nop N-terminal domain
e4by9C4 C:251-366 HhH/H2TH SAM/DNA-glycosylase Nop C-terminal domain

Domains in the same PDB:

e4by9C3 C:1-119 Nop N-terminal domain Nop N-terminal domain Nop N-terminal domain
e4by9C2 C:120-250 Nop N-terminal domain Nop N-terminal domain Nop N-terminal domain
e4by9C4 C:251-366 HhH/H2TH SAM/DNA-glycosylase Nop C-terminal domain
e4by9D1 D:1-121 Bacillus chorismate mutase-like L30e-like L30e-like
e4by9E1 E:1-227 Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases
e4by9F2 F:1-119 Nop N-terminal domain Nop N-terminal domain Nop N-terminal domain
e4by9F3 F:120-250 Nop N-terminal domain Nop N-terminal domain Nop N-terminal domain
e4by9F4 F:251-366 HhH/H2TH SAM/DNA-glycosylase Nop C-terminal domain
e4by9G1 G:1-121 Bacillus chorismate mutase-like L30e-like L30e-like
e4by9H1 H:1-227 Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases
e4by9I3 I:1-119 Nop N-terminal domain Nop N-terminal domain Nop N-terminal domain
e4by9I2 I:120-250 Nop N-terminal domain Nop N-terminal domain Nop N-terminal domain
e4by9I4 I:251-366 HhH/H2TH SAM/DNA-glycosylase Nop C-terminal domain
e4by9J1 J:1-121 Bacillus chorismate mutase-like L30e-like L30e-like
e4by9K1 K:1-227 Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases
e4by9L2 L:1-119 Nop N-terminal domain Nop N-terminal domain Nop N-terminal domain
e4by9L3 L:120-250 Nop N-terminal domain Nop N-terminal domain Nop N-terminal domain
e4by9L4 L:251-366 HhH/H2TH SAM/DNA-glycosylase Nop C-terminal domain
e4by9M1 M:1-121 Bacillus chorismate mutase-like L30e-like L30e-like
e4by9N1 N:1-227 Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases

Structural contacts of domain e4by9C4 of H-group "SAM/DNA-glycosylase":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4by9F3 C:x,y,z->F:X,Y,Z Nop N-terminal domain Interaction Interface Pymol
e4by9I3 C:x,y,z->I:X,Y,Z Nop N-terminal domain Interaction Interface Pymol
e4by9I4 C:x,y,z->I:X,Y,Z SAM/DNA-glycosylase Interaction Interface Pymol
e4by9I2 C:x,y,z->I:X,Y,Z Nop N-terminal domain Interaction Interface Pymol
e4by9D1 C:x,y,z->D:X,Y,Z L30e-like Interaction Interface Pymol
e4by9L3 C:x,y,z->L:X,Y,Z Nop N-terminal domain Interaction Interface Pymol
e4by9K1 C:x,y,z->K:X,Y,Z Rossmann-related Interaction Interface Pymol