Domain ID e4bybL1

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: Ribosom_S12_S23
UID: 001095177
Type: Automatic domain
Parent: e2uubL1
Range: L:5-129
Ligands: MG
PDB: 4byb
PDB Description:
Hsap BLAST neighbor: O15235
Species:

Structure of domain e4bybL1

Domains in the same chain:

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e4bybL1 L:5-129 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Domains in the same PDB:

e4bybC3 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4bybC4 C:107-208 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4bybE2 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4bybE1 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4bybF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4bybG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4bybH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4bybH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4bybJ1 J:3-101 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4bybK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4bybL1 L:5-129 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4bybN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4bybO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4bybP1 P:1-84 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4bybR1 R:19-88 HTH HTH tri-helical
e4bybT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e4bybY1 Y:1-84 RelE-like RelE-like RelE-like
e4bybZ1 Z:101-184 RelE-like RelE-like RelE-like

Structural contacts of domain e4bybL1 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4bybY1 L:X,Y,Z->Y:x,y,z RelE-like Interaction Interface Pymol
e4bybH2 L:x,y,z->H:X,Y,Z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol