Domain ID e4bydL1

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: Ribosom_S12_S23
UID: 001095235
Type: Automatic domain
Parent: e2uubL1
Range: L:5-129
Ligands: MG
PDB: 4byd
PDB Description:
Hsap BLAST neighbor: O15235
Species:

Structure of domain e4bydL1

Domains in the same chain:

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e4bydL1 L:5-129 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Domains in the same PDB:

e4bydC2 C:2-105 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4bydC1 C:106-208 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4bydE2 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4bydE1 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4bydF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4bydG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4bydH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4bydH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4bydJ1 J:3-101 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4bydK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4bydL1 L:5-129 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4bydN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4bydO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4bydP1 P:1-84 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4bydR1 R:19-88 HTH HTH tri-helical
e4bydT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e4bydY1 Y:1-84 RelE-like RelE-like RelE-like
e4bydZ1 Z:1-84 RelE-like RelE-like RelE-like

Structural contacts of domain e4bydL1 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4bydY1 L:X,Y,Z->Y:x,y,z RelE-like Interaction Interface Pymol
e4bydH2 L:x,y,z->H:X,Y,Z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol