ECOD: domain e4c2mA5

Domain ID e4c2mA5

A: a+b complex topology
X: second helical domain in RNA-polymerase beta-prime subunit
H: second helical domain in RNA-polymerase beta-prime subunit
T: second helical domain in RNA-polymerase beta-prime subunit
F: RNA_pol_Rpb1_5,RNA_pol_Rpb1_4

UID:	002418005
Type:	Manual domain
Parent:	e4c3hA5
Range:	A:827-1053
PDB:	4c2m
PDB Description:	DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA190
UniProt:	P10964
Hsap BLAST neighbor:	O95602
Species:	Saccharomyces cerevisiae

Domains in the same chain:

Download Pymol

e4c2mA1	A:1-141,A:174-273,A:312-463	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e4c2mA2	A:464-505,A:581-665	cradle loop barrel	RIFT-related	double psi
e4c2mA3	A:506-580	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e4c2mA4	A:666-826	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e4c2mA5	A:827-1053	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e4c2mA6	A:1054-1180	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase I RPA190 subunit	third helical domain in yeast RNA-polymerase I RPA190 subunit
e4c2mA7	A:1181-1234,A:1545-1664	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e4c2mA8	A:1235-1261,A:1498-1544	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4c2mA9	A:1262-1349,A:1361-1497	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit

Domains in the same PDB:

e4c2m11	1:27-70	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e4c2m21	2:8-115	triple barrel	triple barrel	RNA polymerase I subunits A49/A34.5 dimerization domains
e4c2m31	3:25-181	triple barrel	triple barrel	RNA polymerase I subunits A49/A34.5 dimerization domains
e4c2mA1	A:1-141,A:174-273,A:312-463	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e4c2mA2	A:464-505,A:581-665	cradle loop barrel	RIFT-related	double psi
e4c2mA3	A:506-580	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e4c2mA4	A:666-826	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e4c2mA5	A:827-1053	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e4c2mA6	A:1054-1180	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase I RPA190 subunit	third helical domain in yeast RNA-polymerase I RPA190 subunit
e4c2mA7	A:1181-1234,A:1545-1664	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e4c2mA8	A:1235-1261,A:1498-1544	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4c2mA9	A:1262-1349,A:1361-1497	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4c2mB1	B:8-209,B:401-547	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4c2mB2	B:210-400	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e4c2mB3	B:548-646	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e4c2mB4	B:647-761	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e4c2mB5	B:762-798,B:912-1040	cradle loop barrel	RIFT-related	double psi
e4c2mB6	B:799-911	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4c2mB7	B:1041-1203	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4c2mC1	C:31-75,C:222-335	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e4c2mC2	C:76-221	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e4c2mD1	D:12-48,D:80-100	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e4c2mE2	E:4-143	Restriction endonuclease-like	Eukaryotic RPB5 N-terminal domain	Eukaryotic RPB5 N-terminal domain
e4c2mE1	E:144-215	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e4c2mF1	F:55-154	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e4c2mG3	G:14-126	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e4c2mG2	G:126-170,G:215-250	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4c2mH1	H:3-146	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4c2mI1	I:2-67	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e4c2mI2	I:68-125	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e4c2mJ1	J:1-69	HTH	RPB10	RPB10
e4c2mK1	K:42-142	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e4c2mL1	L:27-70	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e4c2mM1	M:8-115	triple barrel	triple barrel	RNA polymerase I subunits A49/A34.5 dimerization domains
e4c2mN1	N:24-180	triple barrel	triple barrel	RNA polymerase I subunits A49/A34.5 dimerization domains
e4c2mP19	P:1-141,P:174-273,P:312-457	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e4c2mP23	P:458-499,P:575-659	cradle loop barrel	RIFT-related	double psi
e4c2mP24	P:500-574	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e4c2mP22	P:660-820	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e4c2mP20	P:821-1047	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e4c2mP26	P:1048-1168	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase I RPA190 subunit	third helical domain in yeast RNA-polymerase I RPA190 subunit
e4c2mP3	P:1169-1214,P:1509-1664	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e4c2mP9	P:1215-1262	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4c2mP8	P:1262-1395,P:1440-1508	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4c2mQ3	Q:8-209,Q:401-547	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4c2mQ7	Q:210-400	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e4c2mQ1	Q:548-646	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e4c2mQ5	Q:647-761	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e4c2mQ4	Q:762-798,Q:912-1040	cradle loop barrel	RIFT-related	double psi
e4c2mQ6	Q:799-911	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4c2mQ2	Q:1041-1203	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4c2mR1	R:31-75,R:222-335	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e4c2mR2	R:76-221	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e4c2mS1	S:12-48,S:79-100	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e4c2mT2	T:4-143	Restriction endonuclease-like	Eukaryotic RPB5 N-terminal domain	Eukaryotic RPB5 N-terminal domain
e4c2mT1	T:144-215	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e4c2mU1	U:55-154	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e4c2mV1	V:14-126	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e4c2mV2	V:127-176,V:215-250	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4c2mW1	W:3-146	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4c2mX1	X:2-67	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e4c2mX2	X:68-125	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e4c2mY1	Y:1-69	HTH	RPB10	RPB10
e4c2mZ1	Z:43-142	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase